PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0394s0010.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family C2H2
Protein Properties Length: 300aa    MW: 33132.4 Da    PI: 7.029
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0394s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.90.00068121143123
                             EEETTTTEEESSHHHHHHHHHHT CS
                 zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                             y+C+ C+++F++   L  H  +H
  SapurV1A.0394s0010.1.p 121 YECKTCNRTFPSFQALGGHRASH 143
                             99**********99999998887 PP
2zf-C2H213.60.0002199221123
                             EEETTTTEEESSHHHHHHHHHHT CS
                 zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                             ++C+ Cg +F++   L  H+r+H
  SapurV1A.0394s0010.1.p 199 HECSTCGAVFTSGQALGGHMRRH 221
                             78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139124.6E-13120145IPR007087Zinc finger, C2H2
SuperFamilySSF576673.79E-8120143No hitNo description
SMARTSM003550.052121143IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.72121148IPR007087Zinc finger, C2H2
PROSITE patternPS000280123143IPR007087Zinc finger, C2H2
SuperFamilySSF576673.79E-8194221No hitNo description
Gene3DG3DSA:3.30.160.603.7E-4197223IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.018199221IPR015880Zinc finger, C2H2-like
PfamPF139127.5E-13199223IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.367199223IPR007087Zinc finger, C2H2
PROSITE patternPS000280201221IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MEASEEVAAH IVKGKRTKRL RVDQSSIPFG LTTDSSSGDG GTNWSPATSI DEFQDSTEEE  60
DMANCLILLA KGHSRDFPEQ QQQHHQDHDS RGGAYTTKFN SRKFLETANS TGPGKVGYYV  120
YECKTCNRTF PSFQALGGHR ASHKKSKAIH HDEKKQNLSV SSDEEDGHFY KNVSSLSLQM  180
SDNNTNRGTY SNQNKGKIHE CSTCGAVFTS GQALGGHMRR HRGSLVSATT TLSLTPTIIE  240
SEEPERARNV LSLDLDLNLP APEDDKFSFA SKQQQKQQQQ KQQNTSLVFS SPALVDCHY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0394s0010.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002311984.31e-179zinc finger protein ZAT5
TrEMBLA0A2K1ZAW81e-178A0A2K1ZAW8_POPTR; Uncharacterized protein
STRINGPOPTR_0010s23610.11e-154(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58634141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.15e-62C2H2 family protein