PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0370s0160.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family HD-ZIP
Protein Properties Length: 839aa    MW: 92287.6 Da    PI: 6.5707
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0370s0160.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.87.7e-181876357
                            --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                            k  ++t+eq+e+Le+l++ +++ps  +r +L +++    +++ +q+kvWFqNrR +ek+
  SapurV1A.0370s0160.1.p 18 KYVRYTPEQVEALERLYHDCPKPSSIRRHQLIRECpilsNIEPKQIKVWFQNRRCREKQ 76
                            5679*****************************************************97 PP
2START171.46e-541623702205
                             HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT CS
                   START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg 88 
                             +aee+++e+++ka+ ++  Wv+++ +++g+++  +++ s++++g  +ra+g+v  +++  v+e+l+d++ W ++++++++l+v+ ++
  SapurV1A.0370s0160.1.p 162 IAEETLTEFLSKATGTAIEWVQMPGMKPGPDSSGIVAISHGCTGVGARACGLVGLEPT-RVAEILKDRPLWFRDCRAVDVLNVLPTA 247
                             789*******************************************************.8888888888****************99 PP

                             ..EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE- CS
                   START  89 ..galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwveh 169
                               g+++l +++l+a+++l+p Rdf+ +Ry+  l++g++v++++S+ ++q+ p+    +++vRae+lpSg+l++p+++g+s +++v+h
  SapurV1A.0370s0160.1.p 248 ngGTIELLYMQLYAPTTLAPgRDFWLLRYTSVLEDGSLVVCERSLKNTQNGPSmppVQHFVRAEMLPSGYLVRPCEGGGSIIHVVDH 334
                             99*************************************************9988899***************************** PP

                             EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
                   START 170 vdlkgrlphwllrslvksglaegaktwvatlqrqce 205
                             +dl+ ++++++lr+l++s++a ++kt++a+l+++++
  SapurV1A.0370s0160.1.p 335 MDLEPWSVPEVLRPLYESSTALAQKTTMAALRHLRQ 370
                             *******************************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.4181377IPR001356Homeobox domain
SMARTSM003891.2E-141581IPR001356Homeobox domain
SuperFamilySSF466891.63E-161781IPR009057Homeodomain-like
CDDcd000866.67E-161878No hitNo description
PfamPF000462.2E-151976IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.607.2E-182076IPR009057Homeodomain-like
CDDcd146861.14E-670109No hitNo description
PROSITE profilePS5084825.143152366IPR002913START domain
CDDcd088751.17E-77156372No hitNo description
SMARTSM002342.6E-38161371IPR002913START domain
Gene3DG3DSA:3.30.530.201.7E-22161367IPR023393START-like domain
SuperFamilySSF559611.51E-36161373No hitNo description
PfamPF018521.8E-51162370IPR002913START domain
SuperFamilySSF559615.27E-5399491No hitNo description
SuperFamilySSF559615.27E-5522597No hitNo description
PfamPF086708.8E-53695837IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 839 aa     Download sequence    Send to blast
MAMSCKDGKQ PLNMDNGKYV RYTPEQVEAL ERLYHDCPKP SSIRRHQLIR ECPILSNIEP  60
KQIKVWFQNR RCREKQRKEA SRLQAVNRKL TAMNKLLMEE NDRLQKQVSQ LVYENGYFRQ  120
HTHNTPLATK DTSCESVVTS GQHHLTPQHP PRDASPAGLL SIAEETLTEF LSKATGTAIE  180
WVQMPGMKPG PDSSGIVAIS HGCTGVGARA CGLVGLEPTR VAEILKDRPL WFRDCRAVDV  240
LNVLPTANGG TIELLYMQLY APTTLAPGRD FWLLRYTSVL EDGSLVVCER SLKNTQNGPS  300
MPPVQHFVRA EMLPSGYLVR PCEGGGSIIH VVDHMDLEPW SVPEVLRPLY ESSTALAQKT  360
TMAALRHLRQ IAQEASQSNV TNWGRRPAAL RALSQRLSRG FNEALNGFSD EGWSMIGNDG  420
MDDVTILVNS SPDKLMGSNL SFTNGFSAVN SAVLCAKASM LLQNVPPAIL LRFLREHRSE  480
WADNNIDAYA AAAVKVGPFS LQGSRVGSSG GQVILPLAHT IEHEEFLEVI KLEGVSHSPE  540
DPMMPRDVFL LQLCCGMDEN AVGTCAELIF APIDATFADD APLLPSGFRI IPLDSGKEAS  600
SPNRTLDLAA ALEVGPVGNK ASGDHSANSG CTRSVMTIAF EFAFESHMQE HVAAMTRQYI  660
RSIISSVQRV ALALSPHLGS QAGLRSPLGT PEAQTLARWI CQSYRSYLGV ELLKSNGEGS  720
ESILKTLWHH SDAIMCCSLK ALPIFTFANQ AGLDMLETTL VALQDITLEK IFDDHGRKTL  780
CSEFPQIMQQ GFTCLQGGIC LSSMGRPVSY ERAVAWKVLN EEENAHCICF MFINWSFV*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:15705957, ECO:0000269|PubMed:16617092}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0370s0160.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269|PubMed:15773855, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:16617092, ECO:0000269|PubMed:17237362}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY9196210.0AY919621.1 Populus trichocarpa class III HD-Zip protein 6 (HB6) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002304217.10.0homeobox-leucine zipper protein ATHB-15
SwissprotQ9ZU110.0ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15
TrEMBLQ5D1M10.0Q5D1M1_POPTR; Class III HD-Zip protein 6
STRINGPOPTR_0003s04860.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19463387
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]