PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0302s0230.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB_related
Protein Properties Length: 458aa    MW: 50787.8 Da    PI: 4.1095
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0302s0230.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.61.2e-07256304247
                             SSS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHH CS
         Myb_DNA-binding   2 grWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqky 47 
                             ++WT+eE++++ ++v   +       W+  ++t++  Rt k+++++++++
  SapurV1A.0302s0230.1.p 256 NKWTAEEEQIFHEVVLSNPVSsgknFWDNLSATFP-SRTKKELVNYYFNV 304
                             58*************9998778888**********.***********996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.6E-6252314IPR009057Homeodomain-like
SuperFamilySSF466896.01E-6254305IPR009057Homeodomain-like
SMARTSM007170.0013254307IPR001005SANT/Myb domain
PROSITE profilePS500906.446256305IPR017877Myb-like domain
CDDcd001671.97E-6257305No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 458 aa     Download sequence    Send to blast
MIQKRAFADD NSHEVARKYP RTMEHIDQLA PTFSLDNAHQ KHLVSGDDSF GEHQDVGRSA  60
SDSVTEISNG TSKEFETGDN GCFPQFLWIS NGFLEADNLS YFPEYFDHGH QVRALLEPDE  120
ACSSLDYPFR KSVSIGPEHQ ANVPEWGSQG SSTSLNQIDE SNLQVARAQS SSPGAIIDGC  180
YEENMRGTCV LPMPEQEASA NYCYEATKGD CGCPDSGSIR CIKQHVSEAR LKLRENLGEE  240
IFEGLGFCDM GEVVANKWTA EEEQIFHEVV LSNPVSSGKN FWDNLSATFP SRTKKELVNY  300
YFNVFMLRKR AEQNRFDPLN IDSDDDEWQR IGGETVGNDE GSAVESLTGQ DSSVYCQDDQ  360
AENWNEYVED EDGVVASKDG VDNVALKVAT DEEYEGDVDD FSGVQVGIYH GDHAGDLGHK  420
HISQTSGNYT DDFDVQDDSC TSYDHHQDSI DCCGHLT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0302s0230.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024455540.10.0uncharacterized protein LOC7461175
RefseqXP_024455541.10.0uncharacterized protein LOC7461175
TrEMBLA0A2K2ATC80.0A0A2K2ATC8_POPTR; Uncharacterized protein
TrEMBLA0A385JHY30.0A0A385JHY3_POPTO; Uncharacterized protein
STRINGPOPTR_0004s11750.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2153810