PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0290s0130.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family NF-YB
Protein Properties Length: 217aa    MW: 24070 Da    PI: 7.9701
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0290s0130.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB177.31.4e-5528122397
                   NF-YB   3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkk 89 
                             eqdrflPianvsrimkk lPanakisk+aketvqecvsefisf+t+easdkcqrekrktingddllwa++ lGfe+yv plkvyl+k
  SapurV1A.0290s0130.1.p  28 EQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTILGFENYVGPLKVYLNK 114
                             8************************************************************************************** PP

                   NF-YB  90 yrelegek 97 
                             yre+egek
  SapurV1A.0290s0130.1.p 115 YRETEGEK 122
                             ******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.3E-5226131IPR009072Histone-fold
SuperFamilySSF471131.2E-4029136IPR009072Histone-fold
PfamPF008081.9E-273296IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006154.8E-196078No hitNo description
PROSITE patternPS0068506379IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006154.8E-197997No hitNo description
PRINTSPR006154.8E-1998116No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MTGKRSRVSP VGSPQLSESI SESSYKLEQD RFLPIANVSR IMKKSLPANA KISKEAKETV  60
QECVSEFISF ITGEASDKCQ REKRKTINGD DLLWAMTILG FENYVGPLKV YLNKYRETEG  120
EKNSMARQED QYLSPTNHVS PGTLSAEMDL RSYNAGALCS LGTEVAAKSN GENTRFHGCQ  180
ENNLMVGDFN MNRIRDHGDR NSSRAMAGQP HHGVSW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B2e-4628117392Transcription factor HapC (Eurofung)
4g92_B2e-4628117392Transcription factor HapC (Eurofung)
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0290s0130.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ1618801e-148HQ161880.1 Populus euphratica nuclear transcription factor Y-alpha (NFYA) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024461102.11e-123nuclear transcription factor Y subunit B-3
TrEMBLT1QYV91e-122T1QYV9_9ROSI; Nuclear transcription factor YB7
STRINGPOPTR_0005s08510.11e-110(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59134150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14540.13e-63nuclear factor Y, subunit B3