PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0283s0180.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB
Protein Properties Length: 1032aa    MW: 113309 Da    PI: 5.0861
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0283s0180.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.65e-174086148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                            +g W +eEde+l +av+++ g++Wk+Ia+++   Rt+ qc +rwqk+l
  SapurV1A.0283s0180.1.p 40 KGQWKAEEDEILRKAVQRFKGKNWKKIAECFK-DRTDVQCLHRWQKVL 86
                            799****************************9.************986 PP
2Myb_DNA-binding66.45.1e-2192138148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                             +g+W++eEde++v++v+++G++ W+tIa++++ gR +kqc++rw+++l
  SapurV1A.0283s0180.1.p  92 KGPWSKEEDEIIVELVNKYGPKKWSTIAQHLP-GRIGKQCRERWHNHL 138
                             79******************************.*************97 PP
3Myb_DNA-binding46.58.7e-15144186145
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                             + +WT++E++ l++a++ +G++ W+   + ++ gRt++ +k++w+
  SapurV1A.0283s0180.1.p 144 KEAWTQQEELALIRAHQIYGNR-WAELTKFLP-GRTDNAIKNHWN 186
                             579*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.753586IPR017930Myb domain
SuperFamilySSF466898.61E-153792IPR009057Homeodomain-like
SMARTSM007178.8E-143988IPR001005SANT/Myb domain
PfamPF002492.6E-144086IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-214194IPR009057Homeodomain-like
CDDcd001677.34E-134386No hitNo description
PROSITE profilePS5129433.35787142IPR017930Myb domain
SuperFamilySSF466891.95E-3189185IPR009057Homeodomain-like
SMARTSM007171.1E-1991140IPR001005SANT/Myb domain
PfamPF002493.7E-1992138IPR001005SANT/Myb domain
CDDcd001673.20E-1794138No hitNo description
Gene3DG3DSA:1.10.10.601.6E-2895142IPR009057Homeodomain-like
PROSITE profilePS5129418.727143193IPR017930Myb domain
SMARTSM007178.6E-15143191IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-20143193IPR009057Homeodomain-like
PfamPF002496.3E-13144187IPR001005SANT/Myb domain
CDDcd001672.55E-11146186No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1032 aa     Download sequence    Send to blast
MESSDKLISA PLDGLVSDRI PRPPKLLHGR TSGPARRSTK GQWKAEEDEI LRKAVQRFKG  60
KNWKKIAECF KDRTDVQCLH RWQKVLNPEL VKGPWSKEED EIIVELVNKY GPKKWSTIAQ  120
HLPGRIGKQC RERWHNHLNP AINKEAWTQQ EELALIRAHQ IYGNRWAELT KFLPGRTDNA  180
IKNHWNSSVK KKLDSYVASG LLEQFQSSPL VGHQTLSMPS SSSRLHSSGD DNAQRGGSEA  240
EDISECSQGS TMVGCSQSAG DLGIAVFHTR EELQYAEESG LRKEQSSSPA SCSEQYYIPE  300
MPCELGGSSN FLQQSFSHNT LPSTSNDYQF DLPELPNLSA LELRQESSAL PTHCINANKS  360
HELVNAPFQT SNGQLDAPTS MGNIAASSEQ SGQIFISDDE CCRILFSEAA KCEIFSSENI  420
TKDSNVADLG GEMDSSLPQS PNIQISETER STSQSSCPPR SSILGTSCCQ YFLPGPSLHS  480
ADDNKLVHGR EPNQLTVQSF GTLEQQFITS MHDSFIYTND AINPSCDNGT GNTVLQEQPF  540
LKEPPKLVPV NTFSSDSVTI SSCAANEKPN EHAEQQEAGG LCYEPPRFPS LDMPFLSCDL  600
VQSGSDMQQE YSPLGIRQLM MSSMNCITPF RLWDSPSRDG SPDAVLKSAA KTFTGTPSIL  660
KKRNRDLLSP LSDRRGDKKL EIDMASNLSK EFSCLDVMFD GSEIHNRSTS LLPSSSKQEK  720
NHESSGEDKE NLDPALEGAE EFCNNTKDNV KQGTGDCDAR SKVHSDASVQ QSSGALCEEN  780
TNDLLFSPDQ LGFKTDRAFA PSARTPRNLY RKILGTLSEL ASGSESQFGN PCMIFSPTIC  840
KKNHENHIIE STSAQSIPSP APSENMPDNS GNNGGNGNFG IFGDTPFKRS IESPSAWKSP  900
WFINSFVPGP RIDTEISIED IGYFMSPGDR SYDAIALMKE LSEHTASAYA DALEVLGKDT  960
PESILKEKRH SNDQNGDQEN RSSHLASNVS TECRTLDFSE CGTPGKITEN GKSSSAISFS  1020
SPSAYLLKGC R*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C2e-69401936159MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-69401936159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0283s0180.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011026591.10.0PREDICTED: myb-related protein 3R-1-like isoform X1
TrEMBLA0A3N7H8D30.0A0A3N7H8D3_POPTR; Uncharacterized protein
STRINGPOPTR_0018s00710.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37273362
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32730.20.0Homeodomain-like protein