PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0279s0180.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family bHLH
Protein Properties Length: 283aa    MW: 31457.1 Da    PI: 9.9622
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0279s0180.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.81.7e-12101148355
                             HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                     HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                             + h ++Er+RR+++ ++f  L  ++P +     kK++Ka++L  A++Y+k+Lq
  SapurV1A.0279s0180.1.p 101 QDHIIAERKRREKLSQRFIALSAVVPGL-----KKMDKASVLGDAIKYLKQLQ 148
                             6799************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.9198147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.0E-10101148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-17102160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.62E-17102165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.78E-12103152No hitNo description
SMARTSM003531.5E-14104153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MDTTPATIST VRPTKQLKTD HFPNPQSAFP PNILSFFNSN HANHMGLMKP KEEAVCSKSI  60
SNLPSDMVVS QDSFGNQNYV FKSSQGPKRI NTNGTRLSQS QDHIIAERKR REKLSQRFIA  120
LSAVVPGLKK MDKASVLGDA IKYLKQLQDK VHTLEEQTKR KTMESVIIVK KSHIYADDGD  180
GNSSSDLSKG PVIIHETALP ELEARFCDKH VLIRIHCKKN KGVLEKTVAE VEKLHLSVTN  240
SSVLAFGTSA LDVTIIAQMD VDFSMSVRDL VKTLRSAFQY FM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A6e-14102157863Transcription factor MYC2
5gnj_B6e-14102157863Transcription factor MYC2
5gnj_E6e-14102157863Transcription factor MYC2
5gnj_F6e-14102157863Transcription factor MYC2
5gnj_G6e-14102157863Transcription factor MYC2
5gnj_I6e-14102157863Transcription factor MYC2
5gnj_M6e-14102157863Transcription factor MYC2
5gnj_N6e-14102157863Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1106111ERKRRE
2107112RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0279s0180.1.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002300300.31e-175transcription factor bHLH18
RefseqXP_024463812.11e-175transcription factor bHLH18
RefseqXP_024463821.11e-175transcription factor bHLH18
RefseqXP_024463825.11e-175transcription factor bHLH18
RefseqXP_024463830.11e-175transcription factor bHLH18
TrEMBLA0A2K2C5921e-173A0A2K2C592_POPTR; Uncharacterized protein
STRINGPOPTR_0001s29400.11e-173(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45534164
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.12e-63bHLH family protein