PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0272s0190.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family HD-ZIP
Protein Properties Length: 842aa    MW: 92582.9 Da    PI: 6.3475
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0272s0190.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.36.2e-192179357
                            --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                            k  ++t+eq+e+Le+l++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  SapurV1A.0272s0190.1.p 21 KYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECpilsHIEPKQIKVWFQNRRCREKQ 79
                            5679*****************************************************97 PP
2START185.43.1e-581663742205
                             HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT CS
                   START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg 88 
                             +aee++ ++++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v  +++  v+e+l+d++ W ++++++++++++s+g
  SapurV1A.0272s0190.1.p 166 IAEETLSQFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCNGVAARACGLVGLEPT-RVAEILKDRPSWFRDCRAVDVVNALSTG 251
                             78999*****************************************************.8888888888****************** PP

                             ..EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE- CS
                   START  89 ..galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwveh 169
                               g+++l++++l+a+++l+p Rdf+ +Ry+  l++g++v++++S++++q+ p+   ++++vRae+lpSg+li+p+++g+s +++v+h
  SapurV1A.0272s0190.1.p 252 sgGTIELIYMQLYAPTTLAPaRDFWLLRYTSVLEDGSLVVCERSLNNTQNGPSmppTQHFVRAEMLPSGYLIRPCEGGGSIIHVVDH 338
                             ***************************************************99999******************************* PP

                             EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
                   START 170 vdlkgrlphwllrslvksglaegaktwvatlqrqce 205
                             +dl+ ++++++lr+l++s++  ++kt++a+l+++++
  SapurV1A.0272s0190.1.p 339 MDLEPWSVPEVLRPLYESSTLLAQKTTMAALRHLRQ 374
                             *******************************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.6451680IPR001356Homeobox domain
SMARTSM003895.2E-161884IPR001356Homeobox domain
CDDcd000861.67E-162181No hitNo description
SuperFamilySSF466895.13E-172184IPR009057Homeodomain-like
PfamPF000461.5E-162279IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.6E-182379IPR009057Homeodomain-like
CDDcd146861.15E-673112No hitNo description
PROSITE profilePS5084825.829156384IPR002913START domain
CDDcd088751.06E-80160375No hitNo description
SMARTSM002345.3E-44165375IPR002913START domain
Gene3DG3DSA:3.30.530.201.1E-24165371IPR023393START-like domain
SuperFamilySSF559615.91E-39165377No hitNo description
PfamPF018527.3E-56166374IPR002913START domain
PfamPF086706.2E-51700840IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009733Biological Processresponse to auxin
GO:0010067Biological Processprocambium histogenesis
GO:0010072Biological Processprimary shoot apical meristem specification
GO:0010089Biological Processxylem development
GO:0045597Biological Processpositive regulation of cell differentiation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 842 aa     Download sequence    Send to blast
MMAVSSTCKD GSTRIAMDNG KYVRYTPEQV EALERLYHEC PKPSSMRRQQ LIRECPILSH  60
IEPKQIKVWF QNRRCREKQR KEASRLQAVN RKLTAMNKLL MEENDRLQKQ VSQLVYENSY  120
FRQQTQNAPN LATTDTSCES VVTSGQHHLT PQHPPRDASP AGLLSIAEET LSQFLSKATG  180
TAVEWVQMPG MKPGPDSIGI VAISHGCNGV AARACGLVGL EPTRVAEILK DRPSWFRDCR  240
AVDVVNALST GSGGTIELIY MQLYAPTTLA PARDFWLLRY TSVLEDGSLV VCERSLNNTQ  300
NGPSMPPTQH FVRAEMLPSG YLIRPCEGGG SIIHVVDHMD LEPWSVPEVL RPLYESSTLL  360
AQKTTMAALR HLRQISQEVS QPNVSTGWGR RPAALRALSQ RLSKGFNEAV NGFADEGWSM  420
LESDGIDDVT VLVNSSPAKM MGVNFSYANG FPSMSNAVLC AKASMLLQNV PPAILLRFLR  480
EHRSEWADSG IDAYAAAAVK AGPCSLPMSR AGNFGGQVIL PLAHTIEHEE FMEVIKLENM  540
GYREDMLMPG DVFLLQLCSG VDENAVGTSA ELIFAPIDAT FSDDAPIIPS GFRIIPLDSG  600
MDASSPNRTL DLASALEVGP AGNRASGDLS GRSGCTKSVM TIAFQFAFEM HLQENVASMA  660
RQYVRSIIAS VQRVALALSP SHFGSHSGFR PPPGTPEAHT LARWICESYR CYLGVELLKN  720
EGSESILKAL WHHSDALVCC SLKTLPVFTF ANQAGLDMLE TTLVALQDIT LEKIFDDNGR  780
KTLYSEFPQI MQQGFMCLQG GICLSSMGRP VSYERAVAWK VLNEEESAHC ICFMFINWSF  840
V*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of vascular development. May promote differentiation of precambial and cambial cells. {ECO:0000269|PubMed:11402194, ECO:0000269|PubMed:15598805}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0272s0190.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by miR165. {ECO:0000269|PubMed:17237362, ECO:0000269|PubMed:8575317}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY9196230.0AY919623.1 Populus trichocarpa class III HD-Zip protein 8 (HB8) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024459734.10.0homeobox-leucine zipper protein ATHB-8
RefseqXP_024459736.10.0homeobox-leucine zipper protein ATHB-8
RefseqXP_024459737.10.0homeobox-leucine zipper protein ATHB-8
SwissprotQ391230.0ATHB8_ARATH; Homeobox-leucine zipper protein ATHB-8
TrEMBLA0A1X9ITT90.0A0A1X9ITT9_POPTO; Truncated hemoglobin
STRINGPOPTR_0006s25390.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19463387
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32880.10.0homeobox gene 8
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Hategan L,Godza B,Kozma-Bognar L,Bishop GJ,Szekeres M
    Differential expression of the brassinosteroid receptor-encoding BRI1 gene in Arabidopsis.
    Planta, 2014. 239(5): p. 989-1001
    [PMID:24488524]
  3. Baima S, et al.
    Negative feedback regulation of auxin signaling by ATHB8/ACL5-BUD2 transcription module.
    Mol Plant, 2014. 7(6): p. 1006-1025
    [PMID:24777988]
  4. Kakehi J, et al.
    Mutations in ribosomal proteins, RPL4 and RACK1, suppress the phenotype of a thermospermine-deficient mutant of Arabidopsis thaliana.
    PLoS ONE, 2015. 10(1): p. e0117309
    [PMID:25625317]
  5. Jia X, et al.
    Functional plasticity of miR165/166 in plant development revealed by small tandem target mimic.
    Plant Sci., 2015. 233: p. 11-21
    [PMID:25711809]
  6. Liu S, et al.
    Expression of wild-type PtrIAA14.1, a poplar Aux/IAA gene causes morphological changes in Arabidopsis.
    Front Plant Sci, 2015. 6: p. 388
    [PMID:26082787]
  7. Yamaguchi YL, et al.
    Root-Knot and Cyst Nematodes Activate Procambium-Associated Genes in Arabidopsis Roots.
    Front Plant Sci, 2017. 8: p. 1195
    [PMID:28747918]
  8. Yamazaki K, et al.
    Suppression of DELLA signaling induces procambial cell formation in culture.
    Plant J., 2018. 94(1): p. 48-59
    [PMID:29383774]