PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0260s0280.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family Trihelix
Protein Properties Length: 298aa    MW: 33775.8 Da    PI: 6.5368
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0260s0280.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix48.62.1e-1527117186
                trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyf 82 
                             +W+++ + +L++a  ++  +l+rg+l++++W++v++++     + ++ +r+ +qCk++++ ++k+yk +k +  + + + +s++p+f
  SapurV1A.0260s0280.1.p  27 CWSEEATSTLVDAWGRRYLELNRGNLRQKDWQDVADAVntlhgHTKKTHRTDVQCKNRIDTIKKKYKIEKSRVVSSNGTLTSSWPFF 113
                             7*****************************************999**************************999998888899**** PP

                trihelix  83 dqle 86 
                             ++l+
  SapurV1A.0260s0280.1.p 114 ERLD 117
                             *997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138375.2E-2625118No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MEDLIESSSV TPSTTPHSRP LPIREDCWSE EATSTLVDAW GRRYLELNRG NLRQKDWQDV  60
ADAVNTLHGH TKKTHRTDVQ CKNRIDTIKK KYKIEKSRVV SSNGTLTSSW PFFERLDVLI  120
GSNFNSSAKK PLSPSLSPSP PVALPLHPSY RRSHQVSSTP SPQPAALAVA LPQKRPLPVD  180
DGGYFRRNYS AMAAAAAAQE SDSEEEEEEF EAGERESVEE DGEGEGIKRL ARAVERFGEV  240
YERVESEKLK QMVDLEKQRM KFAKDLEMER MRIFTETQIQ LEKIKKGKRA PDNERDY*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00413DAPTransfer from AT3G58630Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0260s0280.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002299577.21e-167trihelix transcription factor ASIL2 isoform X2
RefseqXP_002303549.11e-167trihelix transcription factor ASIL2
TrEMBLB9GKS11e-166B9GKS1_POPTR; Uncharacterized protein
TrEMBLB9GW351e-166B9GW35_POPTR; Uncharacterized protein
STRINGPOPTR_0001s08350.11e-175(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18873379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58630.17e-40sequence-specific DNA binding transcription factors