PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0250s0110.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

GRAS

Protein Properties

Length: 437aa MW: 49429.4 Da PI: 6.8708

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0250s0110.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	395.9	4.1e-121	37	436	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.........sseel 78 +++lL++cA+ +s++d ++a+++ + ls ++sp+gd+++Rl++ f +AL+ rl+r ++++ + +p + +n s SapurV1A.0250s0110.1.p 37 MRQLLVSCADLISQSDYSAAKRFFSILSSNSSPYGDSTERLVHQFIRALSLRLNR--PGISPSTAPAALVFDNnmvtsrpcgS---- 117 589**************************************************..55555444433332222233334441.... PP GRAS 79 aal...................kl..fsevsPilkfshltaNqaIleave.geervHiiDfdisqGlQWpaLlqaLasRp....egp 139 + ++ +++++P+++f+hltaNqaIle+++ g+e++HiiDfdi++G+QWp+L+qaLa+R+ ++p SapurV1A.0250s0110.1.p 118 --TsndhkmlisyesdqealrsCYlsLNKITPFIRFCHLTANQAILESIQvGQEAIHIIDFDIMHGVQWPPLMQALAERSndtlQSP 202 ..155555566778888777662256******************984669***********************777777 PP GRAS 140 pslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl.....vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsle 221 p+lRiTg g+ + + l++tg+rL+kfA++lg++f+f++l ++l+ ++++ + p+EalaVn+vl lhr+l+++ SapurV1A.0250s0110.1.p 203 PMLRITGTGQ----DLNVLHRTGDRLSKFAQSLGLRFHFHPLlllnnDPTSLALYLPSAITLLPDEALAVNCVLYLHRFLKDDSREL 285 ********....9**********************9775322235666689999****************6555444 PP GRAS 222 serdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrer 308 +L+ +k l+P+vv+v+e+ea+h+++ Fl+rfleal++y+alfdslea+lp++s+er vE++++grei+++va+eg+ rrer SapurV1A.0250s0110.1.p 286 ---LLFLHKIKALNPRVVTVAEREANHSNPLFLQRFLEALDHYTALFDSLEATLPPTSRERLAVEQVWFGREIMDIVAAEGEGRRER 369 ...59****************************************************************************** PP GRAS 309 hetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 h++le+W++ l+++G+ +vpls +a +qak llr ++ sdgy+++ ++s++lgW++++L+svS+W+ SapurV1A.0250s0110.1.p 370 HQKLETWEMILKSVGLVKVPLSPFALSQAKILLRLHYpSDGYQLQILNNSFFLGWQNQSLFSVSSWQ 436 ****************************************************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	59.851	11	415	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.4E-118	37	436	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010014	Biological Process	meristem initiation
GO:0010223	Biological Process	secondary shoot formation
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 437 aa Download sequence Send to blast
MLGSWSQSQL MSSSNNSHDR REEEETDHPR PPTAFHMRQL LVSCADLISQ SDYSAAKRFF 60 SILSSNSSPY GDSTERLVHQ FIRALSLRLN RPGISPSTAP AALVFDNNMV TSRPCGSTSN 120 DHKMLISYES DQEALRSCYL SLNKITPFIR FCHLTANQAI LESIQVGQEA IHIIDFDIMH 180 GVQWPPLMQA LAERSNDTLQ SPPMLRITGT GQDLNVLHRT GDRLSKFAQS LGLRFHFHPL 240 LLLNNDPTSL ALYLPSAITL LPDEALAVNC VLYLHRFLKD DSRELLLFLH KIKALNPRVV 300 TVAEREANHS NPLFLQRFLE ALDHYTALFD SLEATLPPTS RERLAVEQVW FGREIMDIVA 360 AEGEGRRERH QKLETWEMIL KSVGLVKVPL SPFALSQAKI LLRLHYPSDG YQLQILNNSF 420 FLGWQNQSLF SVSSWQ*

Sequence ? help Back to Top

Protein Sequence Length: 437 aa Download sequence Send to blast

MLGSWSQSQL MSSSNNSHDR REEEETDHPR PPTAFHMRQL LVSCADLISQ SDYSAAKRFF  60
SILSSNSSPY GDSTERLVHQ FIRALSLRLN RPGISPSTAP AALVFDNNMV TSRPCGSTSN  120
DHKMLISYES DQEALRSCYL SLNKITPFIR FCHLTANQAI LESIQVGQEA IHIIDFDIMH  180
GVQWPPLMQA LAERSNDTLQ SPPMLRITGT GQDLNVLHRT GDRLSKFAQS LGLRFHFHPL  240
LLLNNDPTSL ALYLPSAITL LPDEALAVNC VLYLHRFLKD DSRELLLFLH KIKALNPRVV  300
TVAEREANHS NPLFLQRFLE ALDHYTALFD SLEATLPPTS RERLAVEQVW FGREIMDIVA  360
AEGEGRRERH QKLETWEMIL KSVGLVKVPL SPFALSQAKI LLRLHYPSDG YQLQILNNSF  420
FLGWQNQSLF SVSSWQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	1e-59	21	435	3	378	Protein SCARECROW
5b3h_A	1e-59	44	435	25	377	Protein SCARECROW
5b3h_D	1e-59	44	435	25	377	Protein SCARECROW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor required for axillary (lateral) shoot meristem formation during vegetative development. Seems to act upstream of REVOLUTA. {ECO:0000269\|PubMed:12730136}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0250s0110.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC209044	0.0	AC209044.1 Populus trichocarpa clone POP057-J01, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002318447.1	0.0	scarecrow-like protein 18
Swissprot	Q9ZWC5	1e-142	SCL18_ARATH; Scarecrow-like protein 18
TrEMBL	B9I203	0.0	B9I203_POPTR; Uncharacterized protein
STRING	POPTR_0012s02710.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF12926	21	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55580.1	1e-144	GRAS family protein

Link Out ? help Back to Top
Phytozome	SapurV1A.0250s0110.1.p

Publications ? help Back to Top
Zhang B, et al. Novel function of a putative MOC1 ortholog associated with spikelet number per spike in common wheat. Sci Rep, 2015. 5: p. 12211 [PMID:26197925]