PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0248s0230.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | C2H2 | ||||||||
Protein Properties | Length: 380aa MW: 42385 Da PI: 5.4001 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.7 | 0.00039 | 4 | 26 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC+ C ksFs+ L H+r+H SapurV1A.0248s0230.1.p 4 HKCKLCFKSFSNGRALGGHMRSH 26 79********************9 PP | |||||||
2 | zf-C2H2 | 13.6 | 0.0002 | 243 | 265 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC+ C+k+F++ L H +H SapurV1A.0248s0230.1.p 243 YKCETCSKVFKSYQALGGHRASH 265 9************9999998887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 4.27E-5 | 3 | 29 | No hit | No description |
Pfam | PF13912 | 5.8E-6 | 4 | 26 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.596 | 4 | 31 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.038 | 4 | 26 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 6 | 26 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 5.7E-11 | 243 | 267 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.2E-8 | 243 | 265 | No hit | No description |
SMART | SM00355 | 0.021 | 243 | 265 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.429 | 243 | 270 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 245 | 265 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.2E-8 | 292 | 319 | No hit | No description |
Pfam | PF13912 | 2.1E-9 | 297 | 319 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.2 | 297 | 319 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.099 | 297 | 319 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 299 | 319 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 380 aa Download sequence Send to blast |
MEKHKCKLCF KSFSNGRALG GHMRSHLLNL PVPPKLEDQF PHIEVSEDTE SISSSEEEAE 60 EVQGEEEEEE EEEKGAFYGL RENPKRSIRL VDPEFCFAAA DAGSVVLQDR ESETESSKNP 120 TGRRSKRTKR LLENLHHLYH QQRSRQEQGN CNIVKKLEFQ KMGTVKAADE SSSGHEPEPV 180 SSISDTTTEE DVAFCLMMLS RDRWKRKEQE NQEEEQELEG EVEAGTDDSG ELKSCKTKVR 240 GKYKCETCSK VFKSYQALGG HRASHKKLKV YTPSKEPNLE PTENAGASTS LPGKKIHECP 300 FCFRVFSSGQ ALGGHKRSHV IGVAASSSTP VRSSTEFGDK NLGMIDLNLP APVDDDDDIN 360 QADKLSAVSD AEFVNYIKR* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00416 | DAP | Transfer from AT3G60580 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0248s0230.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024440190.1 | 0.0 | zinc finger protein ZAT9 isoform X2 | ||||
TrEMBL | A0A2I4KKY0 | 0.0 | A0A2I4KKY0_POPTR; C2H2 family protein | ||||
STRING | POPTR_0014s06150.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF767 | 34 | 122 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G60580.1 | 1e-63 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0248s0230.1.p |