PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0237s0310.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | ERF | ||||||||
Protein Properties | Length: 312aa MW: 34566 Da PI: 9.5024 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.3 | 1.8e-18 | 106 | 156 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr+++ +g+WvAeIr p + r r++lg+++tae Aa a+++a+ kl+ e SapurV1A.0237s0310.1.p 106 LYRGVRQRH-WGKWVAEIRLPQN---RMRVWLGTYDTAEAAAYAYDRAAYKLRSE 156 59******9.**********954...5*************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.16E-15 | 105 | 165 | No hit | No description |
SuperFamily | SSF54171 | 6.02E-22 | 106 | 163 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 5.3E-30 | 106 | 164 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.4E-33 | 106 | 169 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.853 | 106 | 163 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.9E-10 | 107 | 118 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 9.5E-13 | 107 | 155 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.9E-10 | 129 | 145 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 312 aa Download sequence Send to blast |
MERVQENNLS FAFNRAGIGS SLSQLIMTGG TSTLDSIFSH CQPARTLNSP VLEPLGSSVY 60 LRQRDLLQKF SEENRINTPF SHNLLTNPLQ NPVHTSNYLA PTKKKLYRGV RQRHWGKWVA 120 EIRLPQNRMR VWLGTYDTAE AAAYAYDRAA YKLRSEYARL NFPNLKDPTR LGFTDCGRLD 180 ALNNTVDAKI QAICQKVKRE RAKKNAAKKS DANGNCTRSK KPVKVDSNAS KSSPSSSSSV 240 SPLFSGDNWG GSELVSPAVS EDGFRKCESS SSPSVSTDCA LMVPQAMEFE DCSLARMPSY 300 DPELIWEVLA N* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 5e-19 | 103 | 163 | 2 | 63 | ATERF1 |
3gcc_A | 5e-19 | 103 | 163 | 2 | 63 | ATERF1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0237s0310.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002304554.1 | 1e-174 | ethylene-responsive transcription factor ERF061 | ||||
Swissprot | Q9C7W2 | 3e-64 | ERF61_ARATH; Ethylene-responsive transcription factor ERF061 | ||||
TrEMBL | B9GXH6 | 1e-172 | B9GXH6_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0003s13910.1 | 1e-173 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7181 | 31 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G64380.1 | 1e-52 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0237s0310.1.p |
Publications ? help Back to Top | |||
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