PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0202s0410.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

NAC

Protein Properties

Length: 207aa MW: 23492.3 Da PI: 4.4623

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0202s0410.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	132.6	2.8e-41	6	114	1	109
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWka 85 lppGfrFhPtdeelv++yLk+k++g++++l ++i+e+d+yk+ePw+L k + +++ ewyfF +rd+ky++g r+nrat++gyWk+ SapurV1A.0202s0410.1.p 6 LPPGFRFHPTDEELVNYYLKRKISGQEIDL-DIIPEIDLYKCEPWELAeKsFLPSRDPEWYFFGPRDRKYPNGFRTNRATRAGYWKS 91 79**************************.99**********84335556888************************* PP NAM 86 tgkdkevlskkgelvglkktLvfy 109 tgkd++v + +++++g+kktL y SapurV1A.0202s0410.1.p 92 TGKDRRVSC-QNRAIGMKKTLDSY 114 *****.8999*****877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.83E-44	4	122	IPR003441	NAC domain
PROSITE profile	PS51005	39.888	6	156	IPR003441	NAC domain
Pfam	PF02365	9.5E-22	7	114	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 207 aa Download sequence Send to blast
MAPVGLPPGF RFHPTDEELV NYYLKRKISG QEIDLDIIPE IDLYKCEPWE LAEKSFLPSR 60 DPEWYFFGPR DRKYPNGFRT NRATRAGYWK STGKDRRVSC QNRAIGMKKT LDSYALCRVF 120 KKNGICSEIE EQGQCTTSLS LMESSSQGVI NDYETMSPDV PIASSSCIEE EDKDDSWMQF 180 ITDDPWCSSS TAMVGGEEIS QATFID*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	5e-41	2	115	11	122	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC045, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269\|PubMed:25081480}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0202s0410.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006374257.1	1e-136	NAC domain-containing protein 86 isoform X2
Refseq	XP_024442302.1	1e-136	NAC domain-containing protein 86 isoform X1
Swissprot	Q9FFI5	5e-63	NAC86_ARATH; NAC domain-containing protein 86
TrEMBL	A0A2K1XH72	1e-135	A0A2K1XH72_POPTR; Uncharacterized protein
TrEMBL	U5FPE3	1e-135	U5FPE3_POPTR; Uncharacterized protein
STRING	POPTR_0015s05450.1	1e-135	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9564	33	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G17730.1	7e-95	NAC domain containing protein 57

Link Out ? help Back to Top
Phytozome	SapurV1A.0202s0410.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]