PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0171s0440.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB
Protein Properties Length: 354aa    MW: 39751.9 Da    PI: 9.9929
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0171s0440.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.18.6e-182065147
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                            rg W + Ede+l ++v q+G+ +W+ Ia++++ gR++k+c++rw++ 
  SapurV1A.0171s0440.1.p 20 RGHWRPAEDEKLRQLVDQYGPQNWNFIAEHLQ-GRSGKSCRLRWYNQ 65
                            899*****************************.************96 PP
2Myb_DNA-binding57.43.4e-1873116247
                             SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
         Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                              ++T++E+e+l++a++ +G++ W++I+r ++ gRt++ +k++++ +
  SapurV1A.0171s0440.1.p  73 RPFTEDEEERLLKAHQIHGNR-WASISRLFP-GRTDNAVKNHYHVV 116
                             69*******************.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129426.0081570IPR017930Myb domain
SuperFamilySSF466893.0E-2918113IPR009057Homeodomain-like
SMARTSM007171.7E-151968IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.4E-272173IPR009057Homeodomain-like
CDDcd001673.55E-142364No hitNo description
PfamPF139212.1E-172383No hitNo description
PROSITE profilePS5129420.5871121IPR017930Myb domain
SMARTSM007179.8E-1671119IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-2074119IPR009057Homeodomain-like
CDDcd001675.19E-1274117No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MEDFKGGSSS DGGGKTSCHR GHWRPAEDEK LRQLVDQYGP QNWNFIAEHL QGRSGKSCRL  60
RWYNQLDPNI NKRPFTEDEE ERLLKAHQIH GNRWASISRL FPGRTDNAVK NHYHVVMARR  120
KRERCLTVHG KRNNFQVQYS ADHHHHRSSR NGSTAPGSNF GFFRPQVSLD YGSKLGFQDN  180
IIGRKGNHIP MSSSNSSPSW TNISASTITN DSLVFDVFDA KRRDFIQYSS SSSLYPNEGR  240
PPALNESLHC TYHPSSTIYG GDSYKNVAGK QIPNSKKVVP SNPFAFTSSG DGHGSNKEKT  300
TIERQLVRLS SNRREPAALW KSPMASQQEE NDHGGHLKNQ DVAFIDFLGV GIS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-32201207107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0171s0440.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002309913.30.0transcriptional activator Myb
TrEMBLA0A2I4KKT80.0A0A2I4KKT8_POPTR; MYB family protein
STRINGPOPTR_0007s04140.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23034243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33450.12e-67myb domain protein 69