PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0150s0040.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family M-type_MADS
Protein Properties Length: 204aa    MW: 23154.2 Da    PI: 5.4206
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0150s0040.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF59.63.7e-192168249
                            ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                  SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                            +i++ks  qvtfskRr g+ KKA+ELS LC+a+va++ fs+  k++ +
  SapurV1A.0150s0040.1.p 21 QIQEKSSLQVTFSKRRGGLVKKASELSLLCGAQVAILAFSPGKKVFAF 68
                            68999************************************9999877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006623.9551272IPR002100Transcription factor, MADS-box
SMARTSM004328.1E-261271IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.07E-251390IPR002100Transcription factor, MADS-box
CDDcd002651.45E-321385No hitNo description
PRINTSPR004042.0E-181434IPR002100Transcription factor, MADS-box
PfamPF003193.8E-212268IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-183449IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-184970IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MVTINKHKKQ TQGRQKIEIR QIQEKSSLQV TFSKRRGGLV KKASELSLLC GAQVAILAFS  60
PGKKVFAFGH PDVDVVLDRY LNESSTAREP GAVSCNVPQV QQWNKEYEEA LKELQEEKRR  120
VAMTEEWNKV CENDVNARFW WDEPVDDMGL DELEEFVRAM EELKKNVAAR ANELAMANDH  180
FGNQNMSHID LGVNGFSLEN VLF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3kov_A3e-1613106190Myocyte-specific enhancer factor 2A
3kov_B3e-1613106190Myocyte-specific enhancer factor 2A
3kov_I3e-1613106190Myocyte-specific enhancer factor 2A
3kov_J3e-1613106190Myocyte-specific enhancer factor 2A
3p57_A3e-1613106190Myocyte-specific enhancer factor 2A
3p57_B3e-1613106190Myocyte-specific enhancer factor 2A
3p57_C3e-1613106190Myocyte-specific enhancer factor 2A
3p57_D3e-1613106190Myocyte-specific enhancer factor 2A
3p57_I3e-1613106190Myocyte-specific enhancer factor 2A
3p57_J3e-1613106190Myocyte-specific enhancer factor 2A
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0150s0040.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011036973.11e-117PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLA0A2K1X3121e-113A0A2K1X312_POPTR; Uncharacterized protein
STRINGPOPTR_0017s06710.11e-113(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12833331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.14e-38AGAMOUS-like 62