PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0149s0020.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB
Protein Properties Length: 404aa    MW: 44859.7 Da    PI: 9.1385
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0149s0020.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.22.9e-1694139147
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                             rg W + Ed +l+++v+++G+ +W++Ia+++  gR++k+c++rw++ 
  SapurV1A.0149s0020.1.p  94 RGHWRPAEDSKLKKLVALYGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 139
                             899*****************************.***********996 PP
2Myb_DNA-binding58.12e-18146189146
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                             r+++T+eE+e+l +a++++G++ W+ Iar ++ gRt++ +k++w+ 
  SapurV1A.0149s0020.1.p 146 RKAFTEEEEERLMQAHRLYGNK-WAMIARLFP-GRTDNAVKNHWHV 189
                             789*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.30489140IPR017930Myb domain
SMARTSM007173.3E-1493142IPR001005SANT/Myb domain
SuperFamilySSF466894.77E-2894187IPR009057Homeodomain-like
PfamPF002491.1E-1594139IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.5E-2695147IPR009057Homeodomain-like
CDDcd001672.63E-1397138No hitNo description
PROSITE profilePS5129427.306141195IPR017930Myb domain
SMARTSM007173.1E-15145193IPR001005SANT/Myb domain
PfamPF002493.0E-15146188IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-21148194IPR009057Homeodomain-like
CDDcd001674.17E-12148188No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MVLSLIPNSG MTPPDSSSRE MENWRLTWGF PITGNYRANS DTAVEVKASG SSDGLGKNNE  60
TVNHYADSSN EENPDENRMS GKETESGQSK LCTRGHWRPA EDSKLKKLVA LYGPQNWNLI  120
AEKLEGRSGK SCRLRWFNQL DPRINRKAFT EEEEERLMQA HRLYGNKWAM IARLFPGRTD  180
NAVKNHWHVI MSRKYREQSS GYRRRQSQSV NRRMEDTPSF VGRNAGMKTV PPPYCPNISS  240
AGGRNKLSPC QVGNFNGAGR GGADYGLNGS PHMTSGGEAV SSIKVSQSGF CAQQTPFDFF  300
SGPKSNNMMR MFSHTISRDR PNDEPRNSDF YQHHHPSYTL TMQQSSSQYP YCFSDSTAST  360
LPRAVSAGEP PCSSPSVADQ SRFSGHFETA PPPFIDFLGV GAT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C2e-33941944104C-Myb DNA-Binding Domain
1msf_C2e-33941944104C-Myb DNA-Binding Domain
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0149s0020.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002312252.10.0transcription factor CSA
TrEMBLB9HI820.0B9HI82_POPTR; Uncharacterized protein
STRINGPOPTR_0008s08760.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23034243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.11e-68myb domain protein 105