PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0140s0240.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | bHLH | ||||||||
Protein Properties | Length: 229aa MW: 26001.6 Da PI: 4.9473 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 48.1 | 2.1e-15 | 55 | 99 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 Er+RR+++N++++ Lre +Pk + Kl+Ka+i + A++YIk+Lq SapurV1A.0140s0240.1.p 55 TVSERNRRRKLNDKLFALREAVPKiS------KLDKASIIKDAIDYIKDLQ 99 568*********************66......******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 6.28E-18 | 41 | 113 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.967 | 49 | 98 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.02E-13 | 52 | 103 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 2.3E-18 | 55 | 115 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.8E-13 | 55 | 99 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 9.0E-16 | 55 | 104 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS51671 | 8.566 | 154 | 226 | IPR002912 | ACT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008152 | Biological Process | metabolic process | ||||
GO:0016597 | Molecular Function | amino acid binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MENFEDIFDY QNYWEMANMS WNDELNSWDM DPASTQIYDS SSPDGAASAI ASRNTVSERN 60 RRRKLNDKLF ALREAVPKIS KLDKASIIKD AIDYIKDLQQ QESRLQAEIR ELESERLEKD 120 LPVLLTSKKI PDPRRDPIEV HQLRVTSMGE KTLFVSLTCS KAREATARIC EVFESLKVKI 180 ITASVTTVSG MVKTTILIEA DLEEMDHLKL KIERAISALS GPYNPQSM* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 52 | 61 | RNTVSERNRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0140s0240.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF144513 | 4e-97 | EF144513.1 Populus trichocarpa clone PX0019_O05 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002324689.2 | 1e-134 | transcription factor bHLH35 isoform X1 | ||||
Swissprot | Q2HIV9 | 1e-69 | BH035_ARATH; Transcription factor bHLH35 | ||||
TrEMBL | A0A3N7G7Q0 | 1e-133 | A0A3N7G7Q0_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0018s13830.1 | 1e-117 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3389 | 33 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57150.1 | 7e-73 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0140s0240.1.p |