PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0140s0230.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family bHLH
Protein Properties Length: 274aa    MW: 31435 Da    PI: 5.4494
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0140s0230.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.76.7e-1183126755
                             HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                     HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                               Er RR+ + +++  Lre +P+ +      Kl+Ka++ + A++YI++Lq
  SapurV1A.0140s0230.1.p  83 VSERSRRKMLSDKILALREAVPTiS------KLDKASVIKDAIKYIQDLQ 126
                             57*********************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474598.51E-1567139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.32976125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.99E-1079130No hitNo description
SMARTSM003538.4E-1182131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.5E-1482143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-883126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MVVQVTLTLL LSFEFSLCPP TQPQISMDII DNHLEYQNYW ETTLFWNEHL DYSWETNQQF  60
SVGCSDSSSP DENTQTIASK NIVSERSRRK MLSDKILALR EAVPTISKLD KASVIKDAIK  120
YIQDLQEQER ILQADIRELE SRRLETNHTR DIEDELPVLL RSKRTKYNQV YDHWMARSAC  180
PIQVHELSVT SMGEKTLFVS LTCSKTADAM IRICEVFESL KLKIITANIT TLSGMVKKTV  240
LIEVDEEEKE HLKTKIERGV SALRSAYNPM MGI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0140s0230.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ3631860.0KJ363186.1 Populus euphratica bHLH35 protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024445770.11e-166transcription factor bHLH35
TrEMBLA0A3N7GA771e-165A0A3N7GA77_POPTR; Uncharacterized protein
STRINGPOPTR_0018s13850.11e-134(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33893369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.13e-70bHLH family protein