PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0140s0210.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family bHLH
Protein Properties Length: 264aa    MW: 30108.3 Da    PI: 5.0117
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0140s0210.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.32.5e-1257113754
                             HHHHHHHHHHHHHHHHHHCTSCC.C...........TTS-STCHHHHHHHHHHHHHH CS
                     HLH   7 erErrRRdriNsafeeLrellPk.as........kapskKlsKaeiLekAveYIksL 54 
                               Er+RR+++N++++ Lr ++P+ +             + ++Ka+i + A++YI++L
  SapurV1A.0140s0210.1.p  57 VSERNRRKKLNERLFALRAVVPNiSKvmtvkldkYHFTRQMDKASIIKDAIDYIQEL 113
                             57*********************655*******6556666***************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.62E-1542127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.8450113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.26E-1153118No hitNo description
SMARTSM003535.1E-1456119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.9E-1556128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.7E-1057113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550218.85E-6185254No hitNo description
CDDcd048732.17E-4188251No hitNo description
PROSITE profilePS516718.711189263IPR002912ACT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MEPIENIGEE YQNYWETKMF LQNEELDSWA IDEAFSGYYD SSSPDGAASS AASKNIVSER  60
NRRKKLNERL FALRAVVPNI SKVMTVKLDK YHFTRQMDKA SIIKDAIDYI QELHDQERKI  120
QAELTELESG KLKKNQGGFD TYDHQELPVL LRSKKKKIDY QFYDFGGSKI SPIELLELRV  180
NYMGENTLLV SLTCNKRTDT MVKLCEVFES LGLKIITANI TTVSGRVLKT VFIEADEEEK  240
DQLKLRIEAA IAALNDPISP MSM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0140s0210.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU2271634e-57CU227163.1 Populus EST from severe drought-stressed leaves.
GenBankCU2286164e-57CU228616.1 Populus EST from severe drought-stressed leaves.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002325261.21e-170transcription factor bHLH35
SwissprotQ2HIV93e-90BH035_ARATH; Transcription factor bHLH35
TrEMBLB9IN671e-168B9IN67_POPTR; BHLH family protein
STRINGXP_008223870.11e-135(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33893369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.13e-83bHLH family protein