PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0122s0490.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB
Protein Properties Length: 341aa    MW: 38429.4 Da    PI: 7.247
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0122s0490.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding574.5e-182774148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                            rg W+++Ede+lv++++ +G g+W+++++  g+ R++k+c++rw +yl
  SapurV1A.0122s0490.1.p 27 RGLWSPDEDEKLVKYITTHGHGSWSSVPKLAGLQRCGKSCRLRWINYL 74
                            788*******************************************97 PP
2Myb_DNA-binding49.69e-1680123146
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                             rg++T+ E+ ++v+++++lG++ W+ Ia++++ gRt++++k++w++
  SapurV1A.0122s0490.1.p  80 RGSFTALEESIIVEVHRMLGNR-WAQIAKHLP-GRTDNEVKNFWNS 123
                             899*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.3E-261877IPR009057Homeodomain-like
PROSITE profilePS5129417.8882274IPR017930Myb domain
SuperFamilySSF466895.99E-2924121IPR009057Homeodomain-like
SMARTSM007171.6E-122676IPR001005SANT/Myb domain
PfamPF002499.5E-162774IPR001005SANT/Myb domain
CDDcd001676.72E-113074No hitNo description
PROSITE profilePS5129424.54675129IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.4E-2478130IPR009057Homeodomain-like
SMARTSM007176.9E-1579127IPR001005SANT/Myb domain
PfamPF002492.6E-1480123IPR001005SANT/Myb domain
CDDcd001671.30E-1082122No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MVSCDDMQEG LENKTGHQCC SKQKVKRGLW SPDEDEKLVK YITTHGHGSW SSVPKLAGLQ  60
RCGKSCRLRW INYLRPDLKR GSFTALEESI IVEVHRMLGN RWAQIAKHLP GRTDNEVKNF  120
WNSCIKKKLI AHGLDPKTHN LLSNNYKHNS NSNACKLSYQ YSNQRQTTST FIVDSQINDI  180
MMDMKVPLLP FSTIPPVPDT NPSYPPFLHK FSSISTFEYQ NPNTQAFLSG SNSSIGSVPV  240
SSSTSRPSEF SMLDDSCMWV GGYDPIQSIK LENEQPEQHV LEIEKTNELI SVGQNMDASF  300
ETSTFGFDFV DSTLLACGMY YNPSPIVQPA WNSWALQEKK *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C7e-3071291128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0122s0490.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002303715.10.0transcription factor MYB86
TrEMBLA0A2I4KK680.0A0A2I4KK68_POPTR; MYB family protein
STRINGPOPTR_0003s15440.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF34663267
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12720.12e-80myb domain protein 67