PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0103s0030.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | NF-YC | ||||||||
Protein Properties | Length: 249aa MW: 27765.6 Da PI: 5.5535 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 177 | 1.8e-55 | 77 | 181 | 1 | 102 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavt 84 ql++fw++q ie+++dfknh+lPlarikki+kadedv+misaeaPv+++kace+fileltlrsw+h+eenkrrtl+k+di aa++ SapurV1A.0103s0030.1.p 77 QLQMFWINQlqeIEQTADFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIVAAIS 163 89******99999************************************************************************** PP NF-YC 85 rtdifdflvdivprdelk 102 rtd+fdflvdi+prdelk SapurV1A.0103s0030.1.p 164 RTDVFDFLVDIIPRDELK 181 ***************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 1.68E-33 | 64 | 171 | IPR009072 | Histone-fold |
Pfam | PF00808 | 5.2E-21 | 99 | 162 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 1.4E-36 | 100 | 177 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MDQSEQTRQQ PIMGVVAGAG QMAYASTPYQ AAPMVASGTP SIAITSPTQP PATFSVSPHQ 60 LTYQQAQHFH HQQQQQQLQM FWINQLQEIE QTADFKNHSL PLARIKKIMK ADEDVRMISA 120 EAPVIFAKAC EMFILELTLR SWIHTEENKR RTLQKNDIVA AISRTDVFDF LVDIIPRDEL 180 KEEGLGVTKA TIPVGPPADL PYYYVPQLPV GPPGMIIGKP VDQAAAYEAQ QPQVPWLQTH 240 PQQQQSDN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 2e-57 | 83 | 177 | 1 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 149 | 155 | RRTLQKN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0103s0030.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC214598 | 0.0 | AC214598.1 Populus trichocarpa clone POP052-F04, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011008715.1 | 1e-136 | PREDICTED: nuclear transcription factor Y subunit C-2 | ||||
Refseq | XP_011008716.1 | 1e-136 | PREDICTED: nuclear transcription factor Y subunit C-2 | ||||
Refseq | XP_011008717.1 | 1e-136 | PREDICTED: nuclear transcription factor Y subunit C-2 | ||||
Refseq | XP_011008718.1 | 1e-136 | PREDICTED: nuclear transcription factor Y subunit C-2 | ||||
Refseq | XP_011008719.1 | 1e-136 | PREDICTED: nuclear transcription factor Y subunit C-2 | ||||
Refseq | XP_011008720.1 | 1e-136 | PREDICTED: nuclear transcription factor Y subunit C-2 | ||||
Refseq | XP_011008721.1 | 1e-136 | PREDICTED: nuclear transcription factor Y subunit C-2 | ||||
Swissprot | Q8LCG7 | 2e-78 | NFYC2_ARATH; Nuclear transcription factor Y subunit C-2 | ||||
TrEMBL | B9HGM5 | 1e-133 | B9HGM5_POPTR; NF-YC family protein | ||||
STRING | POPTR_0007s07830.1 | 1e-134 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12372 | 28 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56170.2 | 2e-79 | nuclear factor Y, subunit C2 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0103s0030.1.p |
Publications ? help Back to Top | |||
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