PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0102s0280.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family bHLH
Protein Properties Length: 335aa    MW: 37057.3 Da    PI: 6.3695
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0102s0280.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.91e-09245287855
                             HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                     HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                             + ++RR+ri +++  L++l+P+       K++ +++LekA+ Y+k Lq
  SapurV1A.0102s0280.1.p 245 AAKNRRERISERLKILQDLVPNG-----SKVDLVTMLEKAISYVKFLQ 287
                             569*******************5.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.154237286IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-13239295IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-11239294IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.93E-11243291No hitNo description
SMARTSM003537.5E-12243292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.0E-7246287IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MSLANDRMGS VQTCAYNGNV MGDFSSLGSY GFSEYQKVEF HEEGDRTFKK TSGLMIRNLG  60
MNSSPNSLGS PSSAISGELV FQATDHQAEE AHSLINFKGI GLDNVMHSNG SLISFEQSDR  120
VSQTSCQKDD YTAWEGNLSY NYQWNQMNQK CNKSPRLMED FNCFQRASNF NSMTEKENQG  180
DWLYAESTIV ADSFQDSATP DASNFHKRPN MGESMQALKK QCNDAIKNPK PKSAAGPAKD  240
LQSVAAKNRR ERISERLKIL QDLVPNGSKV DLVTMLEKAI SYVKFLQLQV KVLATDDFWP  300
VQGGKAPDFS QVKEAIDALL SPQTKDRNSG SSSK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0102s0280.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002305203.20.0putative transcription factor bHLH086
TrEMBLA0A2K2ARY40.0A0A2K2ARY4_POPTR; Uncharacterized protein
STRINGPOPTR_0004s08770.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49373253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37800.12e-66RHD SIX-LIKE 1