PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0093s0460.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family NAC
Protein Properties Length: 320aa    MW: 36594 Da    PI: 7.1083
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0093s0460.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM174.33.6e-54101391128
                     NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvka.eekewyfFskrdkkyatgkrknratksgyWk 84 
                             +ppGfrFhPtdeel+ +yL+kkv+ + ++l +vi+evd++k+ePwdL+ k ++ +  ++ewyfFs++dkky+tg+r+nrat++g+Wk
  SapurV1A.0093s0460.1.p  10 VPPGFRFHPTDEELLYYYLRKKVSYEAIDL-DVIREVDLNKLEPWDLKdKcRIGSgPQNEWYFFSHKDKKYPTGTRTNRATTAGFWK 95 
                             69****************************.9***************943444443456**************************** PP

                     NAM  85 atgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                             atg+dk+++ ++++ +g++ktLvfy+grap+g+ktdW+mheyrl
  SapurV1A.0093s0460.1.p  96 ATGRDKAIHLSNSQRIGMRKTLVFYTGRAPHGQKTDWIMHEYRL 139
                             ******************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.18E-603159IPR003441NAC domain
PROSITE profilePS5100558.21610159IPR003441NAC domain
PfamPF023653.7E-2811139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003002Biological Processregionalization
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009834Biological Processplant-type secondary cell wall biogenesis
GO:0010455Biological Processpositive regulation of cell fate commitment
GO:0048829Biological Processroot cap development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MMAGNGQLSV PPGFRFHPTD EELLYYYLRK KVSYEAIDLD VIREVDLNKL EPWDLKDKCR  60
IGSGPQNEWY FFSHKDKKYP TGTRTNRATT AGFWKATGRD KAIHLSNSQR IGMRKTLVFY  120
TGRAPHGQKT DWIMHEYRLD DDNSEVQEDG WVVCRVFKKK SQARGFLPEV YQEEHFSQIK  180
ASASSLPPEP KQNHMQSIYD DYTFDGSMHL PQLFSPESAV APAFVSPLSL NNMDEIECSQ  240
NLLRLTSTGC GLVQPAGRFN GDWSFLDKLL ASQQNLDHQQ HYQNKGNSSS QIVDHVGTST  300
QKFPFQYLGF DSDILRFSK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-54716414170NO APICAL MERISTEM PROTEIN
1ut4_B5e-54716414170NO APICAL MERISTEM PROTEIN
1ut7_A5e-54716414170NO APICAL MERISTEM PROTEIN
1ut7_B5e-54716414170NO APICAL MERISTEM PROTEIN
3swm_A5e-54716417173NAC domain-containing protein 19
3swm_B5e-54716417173NAC domain-containing protein 19
3swm_C5e-54716417173NAC domain-containing protein 19
3swm_D5e-54716417173NAC domain-containing protein 19
3swp_A5e-54716417173NAC domain-containing protein 19
3swp_B5e-54716417173NAC domain-containing protein 19
3swp_C5e-54716417173NAC domain-containing protein 19
3swp_D5e-54716417173NAC domain-containing protein 19
4dul_A5e-54716414170NAC domain-containing protein 19
4dul_B5e-54716414170NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator. Together with BRN1 and BRN2, regulates cellular maturation of root cap. Represses stem cell-like divisions in the root cap daughter cells, and thus promotes daughter cell fate. Inhibits expression of its positive regulator FEZ in a feedback loop for controlled switches in cell division plane. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269|PubMed:19081078, ECO:0000269|PubMed:20197506}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00250DAPTransfer from AT1G79580Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0093s0460.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By FEZ in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002316163.20.0protein SOMBRERO
RefseqXP_011014561.10.0PREDICTED: protein SOMBRERO-like
RefseqXP_011014569.10.0PREDICTED: protein SOMBRERO-like
RefseqXP_024466050.10.0protein SOMBRERO
SwissprotQ9MA171e-125SMB_ARATH; Protein SOMBRERO
TrEMBLA0A3N7HAQ90.0A0A3N7HAQ9_POPTR; Uncharacterized protein
STRINGPOPTR_0010s18420.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72043447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79580.31e-118NAC family protein
Publications ? help Back to Top
  1. Fendrych M, et al.
    Programmed cell death controlled by ANAC033/SOMBRERO determines root cap organ size in Arabidopsis.
    Curr. Biol., 2014. 24(9): p. 931-40
    [PMID:24726156]
  2. Bennett T,van den Toorn A,Willemsen V,Scheres B
    Precise control of plant stem cell activity through parallel regulatory inputs.
    Development, 2014. 141(21): p. 4055-64
    [PMID:25256342]
  3. Karve R,Suárez-Román F,Iyer-Pascuzzi AS
    The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release.
    Plant Physiol., 2016. 171(3): p. 2101-11
    [PMID:27221617]
  4. Kamiya M, et al.
    Control of root cap maturation and cell detachment by BEARSKIN transcription factors in Arabidopsis.
    Development, 2016. 143(21): p. 4063-4072
    [PMID:27803060]