PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0093s0250.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB
Protein Properties Length: 340aa    MW: 37977.7 Da    PI: 7.4577
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0093s0250.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.97.2e-161360148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                            rg W++eEde+lv++++    g+W+++++  g++R++k+c++rw++yl
  SapurV1A.0093s0250.1.p 13 RGLWSPEEDEKLVEYITTRDHGSWSSVPKSAGLKRCGKSCRLRWLNYL 60
                            788*******************************************97 PP
2Myb_DNA-binding46.11.2e-1466109146
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                             rg++++ E++ ++d+++ lG++ W+ I+++++ gRt++++k++w++
  SapurV1A.0093s0250.1.p  66 RGSFSALEEQVIIDVHRILGNR-WAQISKHLP-GRTDNEVKNFWNS 109
                             899*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.8E-23563IPR009057Homeodomain-like
PROSITE profilePS5129414.582860IPR017930Myb domain
SuperFamilySSF466897.52E-2711107IPR009057Homeodomain-like
SMARTSM007172.4E-101262IPR001005SANT/Myb domain
PfamPF002498.7E-141360IPR001005SANT/Myb domain
CDDcd001671.01E-81660No hitNo description
PROSITE profilePS5129423.54861115IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.2E-2364115IPR009057Homeodomain-like
SMARTSM007172.0E-1465113IPR001005SANT/Myb domain
PfamPF002495.2E-1366109IPR001005SANT/Myb domain
CDDcd001676.48E-1068111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MGHRCCNKQK VRRGLWSPEE DEKLVEYITT RDHGSWSSVP KSAGLKRCGK SCRLRWLNYL  60
RPELKRGSFS ALEEQVIIDV HRILGNRWAQ ISKHLPGRTD NEVKNFWNSR LKKKLMAQGL  120
DPKTHNLIPT RQRAANKVAC SMSPSNHEPF SITSHDSKMK DVSLEINPPI LTIVSPDYPS  180
NCSPQPPFFQ TTTSLPLPKS SYDNPSVIWN ANSQNSYDSS LFTCVSSIHE NSLASSSSSS  240
SANPTGFGLV DENCFWSCSN IVEPFEAAKI FESVPPQDRE NHLNKVCDTQ IVGKNKGVQD  300
NMEASFDTSS YDLGLVDSTL FPGSMCHDLS SMDDLAWNF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-28131157108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0093s0250.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1826600.0AC182660.2 Populus trichocarpa clone Pop1-125N19, complete sequence.
GenBankAC1878610.0AC187861.2 Populus trichocarpa clone Pop1-1A4, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011014238.10.0PREDICTED: myb-related protein 330-like
TrEMBLB9HYC10.0B9HYC1_POPTR; Uncharacterized protein
STRINGPOPTR_0010s18170.11e-173(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF34663267
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12720.14e-78myb domain protein 67