PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0092s0560.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

MYB_related

Protein Properties

Length: 1086aa MW: 120988 Da PI: 9.9507

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0092s0560.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	25.1	4.2e-08	46	82	3	41
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqck 41 W++eE l+++a + +G++ W+++a+++ R+ +++ SapurV1A.0092s0560.1.p 46 QWSKEELRLFYKAYRDHGKN-WRKVAAEVH-DRSVEMVE 82 6***************99.*******.99998875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51293	9.373	42	95	IPR017884	SANT domain
SMART	SM00717	4.1E-5	43	91	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.72E-9	43	90	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.8E-5	46	85	IPR009057	Homeodomain-like
Pfam	PF00249	3.9E-7	46	85	IPR001005	SANT/Myb domain
CDD	cd00167	2.40E-6	47	81	No hit	No description
Pfam	PF06584	6.8E-32	618	718	IPR033471	DIRP domain
SMART	SM01135	7.6E-57	618	719	IPR033471	DIRP domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005654	Cellular Component	nucleoplasm
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1086 aa Download sequence Send to blast
MAPTRKRSVN KRLLNEISPE KEVKSSSKNK QQANGKKKLS DKLGTQWSKE ELRLFYKAYR 60 DHGKNWRKVA AEVHDRSVEM VETLYNMNRA YLSLPEGTAS VVGLIAMMTD HYSVLEASES 120 ERESNEVPEV LRKLQKRKRP KVQCSASKED LQQSHMAAST DGCLSFLKRG YGHPLHSVGK 180 RTPRFPVSHL HKKDNGEHYV SPKKKRRKSE NNADDNDDEH VAALTLTETL QRGDSAQVPQ 240 TPHRRTEYMK SSPVQSWDRM PESSPENLCD ASIYEHWSES GTGRGGTDLG YGRDASSLAE 300 MEGIGTVEVH RKGKKFYGKK VRVEKIGNSQ SDGGGEACSG TEEDPKVGIL KGKAEIKMSN 360 AKIDETFRRG QRKRSKKLFS DDEHDDFIGL QTLALVSAME FESSAQLDEE RTAQTGDDKC 420 SVPESASTSH HREKTKLSRQ KEKEISGVDG ITSRKSMFGR CPLISTKPGS EANKQPRSIS 480 NGMLKRKRGA LVSKVLDEEQ ISPVLKGRHN GQISSPLKQL KSLELPEGSS FSGDQKNVPN 540 NLATAQVLVA SQVILPTRKG SRRKMGLKRA MIPKGGKSSV NIRKIQINRQ DGEIHCKGKL 600 SCSLSSPMVR RWCTYEWFYS AVDYPWFAKR EFVEYLNHVG LGHIPRLTRV EWGVIRSSLG 660 RPRRFSERFL HEEREKLQQY RGSVRKHYMD LRTGLRKGLP TDLARPLSVG QRVIAIHPKT 720 REIHDGSVLT VDHDQCRVQF DHAELGVEFV KDIDCMPSNP LDNMPENLRR QRISALPRGL 780 LVNVKSNSRE FTASENLGNA PSPKNALVKP AQVEAHCAIP LAKGVSTDIV NAQGVCSQPS 840 METQIQPKES DIRALSELNR ALDRKASSAL LNLRQHDTYL VNNLPAWLKP PANSCFSGMP 900 RPHTTFVSQE SGSAVLEIVR GSRLKAHNMV DVAVQAISSM KEGEDTFVRI GEALDSMDRR 960 HSGSESRVRM IRAPDGANGG LRLQNQLIPS TSEPQVNSNA SRPQSSDSDK TATAIPSELI 1020 SSCVATLLMI QTCSERQYPP SDVAQIIDSA VTSLQPCCPQ NLPIYREIQM CMGRIKTQIL 1080 ALIPT*

Sequence ? help Back to Top

Protein Sequence Length: 1086 aa Download sequence Send to blast

MAPTRKRSVN KRLLNEISPE KEVKSSSKNK QQANGKKKLS DKLGTQWSKE ELRLFYKAYR  60
DHGKNWRKVA AEVHDRSVEM VETLYNMNRA YLSLPEGTAS VVGLIAMMTD HYSVLEASES  120
ERESNEVPEV LRKLQKRKRP KVQCSASKED LQQSHMAAST DGCLSFLKRG YGHPLHSVGK  180
RTPRFPVSHL HKKDNGEHYV SPKKKRRKSE NNADDNDDEH VAALTLTETL QRGDSAQVPQ  240
TPHRRTEYMK SSPVQSWDRM PESSPENLCD ASIYEHWSES GTGRGGTDLG YGRDASSLAE  300
MEGIGTVEVH RKGKKFYGKK VRVEKIGNSQ SDGGGEACSG TEEDPKVGIL KGKAEIKMSN  360
AKIDETFRRG QRKRSKKLFS DDEHDDFIGL QTLALVSAME FESSAQLDEE RTAQTGDDKC  420
SVPESASTSH HREKTKLSRQ KEKEISGVDG ITSRKSMFGR CPLISTKPGS EANKQPRSIS  480
NGMLKRKRGA LVSKVLDEEQ ISPVLKGRHN GQISSPLKQL KSLELPEGSS FSGDQKNVPN  540
NLATAQVLVA SQVILPTRKG SRRKMGLKRA MIPKGGKSSV NIRKIQINRQ DGEIHCKGKL  600
SCSLSSPMVR RWCTYEWFYS AVDYPWFAKR EFVEYLNHVG LGHIPRLTRV EWGVIRSSLG  660
RPRRFSERFL HEEREKLQQY RGSVRKHYMD LRTGLRKGLP TDLARPLSVG QRVIAIHPKT  720
REIHDGSVLT VDHDQCRVQF DHAELGVEFV KDIDCMPSNP LDNMPENLRR QRISALPRGL  780
LVNVKSNSRE FTASENLGNA PSPKNALVKP AQVEAHCAIP LAKGVSTDIV NAQGVCSQPS  840
METQIQPKES DIRALSELNR ALDRKASSAL LNLRQHDTYL VNNLPAWLKP PANSCFSGMP  900
RPHTTFVSQE SGSAVLEIVR GSRLKAHNMV DVAVQAISSM KEGEDTFVRI GEALDSMDRR  960
HSGSESRVRM IRAPDGANGG LRLQNQLIPS TSEPQVNSNA SRPQSSDSDK TATAIPSELI  1020
SSCVATLLMI QTCSERQYPP SDVAQIIDSA VTSLQPCCPQ NLPIYREIQM CMGRIKTQIL  1080
ALIPT*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	202	206	KKKRR
2	202	207	KKKRRK
3	203	207	KKRRK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0092s0560.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC184086	1e-113	AC184086.2 Populus trichocarpa clone Pop1-58C2, complete sequence.
GenBank	AC214688	1e-113	AC214688.1 Populus trichocarpa clone ACSB193-J04, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002319534.3	0.0	protein ALWAYS EARLY 2 isoform X1
TrEMBL	A0A2K1XZN1	0.0	A0A2K1XZN1_POPTR; Uncharacterized protein
STRING	cassava4.1_000578m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1783	33	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	0.0	DNA binding

Link Out ? help Back to Top
Phytozome	SapurV1A.0092s0560.1.p