PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0092s0130.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family bHLH
Protein Properties Length: 349aa    MW: 39270.6 Da    PI: 8.4665
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0092s0130.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.83.8e-13140191155
                             CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                     HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                             +r++h ++Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i   A++++k+L+
  SapurV1A.0092s0130.1.p 140 QRMTHIAVERNRRKQMNEYLSVLRSLMPES---YVQRGDQASIIGGAINFVKELE 191
                             79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.25E-13138195No hitNo description
Gene3DG3DSA:4.10.280.105.5E-14138195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.06E-16139215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.402139190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-10140191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.9E-10145196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MALEAAVFQQ DWFGHNSKEL YNLAGGNWSY DFGLDQNEED QDKSCSSYFL ENQTETFLHG  60
DWNPLSPPVS MAPPFNDLLL TCSNIPSLSD ASIDAANGLM STTPTSDHHH RLGESSEMAA  120
PRVKRRRSRS KKNREEIENQ RMTHIAVERN RRKQMNEYLS VLRSLMPESY VQRGDQASII  180
GGAINFVKEL EQKLQVLGAC KEMKEKSNGG DQQRVSSLPF SKFFIFPQYS TSSIHCESSA  240
GKDEKLMKSQ SAAIADIEVT MVESHANLKI RSNRRPKQLL KVVSALHSMR LTVLHLNVST  300
ADQIVLYCLS VKVNISEQVY QGIKLTQILF IQGEKTPNLT IFAGRRRL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1140151RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0092s0130.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002319028.20.0transcription factor bHLH94
TrEMBLB9I7Y80.0B9I7Y8_POPTR; BHLH family protein
STRINGPOPTR_0013s02680.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71834135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.12e-66bHLH family protein