PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0090s0480.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family G2-like
Protein Properties Length: 412aa    MW: 45410.8 Da    PI: 8.2089
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0090s0480.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like94.58.2e-30262322156
                 G2-like   1 kprlrWtpeLHerFveaveqLGGsek.....AtPktilelmkvkgLtlehvkSHLQkYRla 56 
                             k+r++W+peLH+rFv+a++qLGGs+      AtPk+i+elm+v+gLt+++vkSHLQkYRl+
  SapurV1A.0090s0480.1.p 262 KQRRCWSPELHRRFVNALQQLGGSQDahsaaATPKQIRELMQVDGLTNDEVKSHLQKYRLH 322
                             79*********************975233337***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.891259324IPR017930Myb domain
SuperFamilySSF466895.2E-16259325IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.5E-28260325IPR009057Homeodomain-like
TIGRFAMsTIGR015572.7E-24262322IPR006447Myb domain, plants
PfamPF002491.9E-7264320IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MGSLSAELSL DFARPSTAKT LPFLPKTITD FLKEVSVIGD SAVKVLKVDG FIKDLEEEKR  60
KIDAFKREMP LCMLLLNDAI QVLRDELMQR GASKNQQPVL EEFIPLKKKF DDDHENDGLI  120
KKEKDSKDKK NWMSSVQLWN ADDHRPSTDY LFDPKQNLKL ESKTNKKGNQ YGNEDTFQAC  180
IGRTAARTFM PFKACSGLSS QEDKLPVPAL SLLTPGIKSL KEESNSTGSR SSCSRSVSTT  240
SAPNSDSNLR NGPQSQQQTA RKQRRCWSPE LHRRFVNALQ QLGGSQDAHS AAATPKQIRE  300
LMQVDGLTND EVKSHLQKYR LHTRRVTPST AAAPANQSID LGGLWMTPDQ YGDSSKATSS  360
QSGSPQGPLQ LAVNTGGTST TGGDSMEDDE DAKSEGYSWK SHIQRSGKDD V*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0090s0480.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1472190.0EF147219.1 Populus trichocarpa clone WS01229_I10 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002313089.10.0myb family transcription factor EFM isoform X1
TrEMBLA0A2I4KKE20.0A0A2I4KKE2_POPTR; G2-like family protein
STRINGPOPTR_0009s10980.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF120834107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03500.17e-59G2-like family protein