PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0089s0520.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family Trihelix
Protein Properties Length: 363aa    MW: 39686.1 Da    PI: 5.0764
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0089s0520.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix63.74.2e-20248334186
                trihelix   1 rWtkqevlaLiearremeerlrr.gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                             rW++ ev+aLi +r+  e+++r  g+   + W+++s+ m   g++r++k+C+ekwen+nk +k    ++ k+  ++s+  pyf +l+
  SapurV1A.0089s0520.1.p 248 RWPEAEVQALIMLRTAWEQQSRVaGSDGTNIWDAISAGMYNMGYNRTAKKCREKWENINKHFKMSLGTSPKKPFQDSTVSPYFPELD 334
                             8*********************626777899**********************************999999988999999****997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.0E-5238307IPR009057Homeodomain-like
PROSITE profilePS500907.526241306IPR017877Myb-like domain
SuperFamilySSF466894.53E-5246308IPR009057Homeodomain-like
CDDcd122032.09E-20248312No hitNo description
PfamPF138371.0E-16248335No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MDLFITGDRQ IQSPNGFPLQ ITPFPPTGNF TMPNSAAAPS AAEAGSSEVA SLPPQKLRPI  60
RRTGRVPSSS REDGGESLRG LVSGQPSEVA VNDGGGSGGV LFDNEFSSSS SDGNDELSVG  120
GGESVGRKRK RKSKIEKFLE SLVMKVMDKQ EEMHKQLVEM IESRERERVV REEAWKQQEM  180
ERMKRDSEAR AEETSRNLAL ISFIQNMTSG HVIEVPQPSM AISHMVDDGG NADAPTQNDF  240
KGGQSNGRWP EAEVQALIML RTAWEQQSRV AGSDGTNIWD AISAGMYNMG YNRTAKKCRE  300
KWENINKHFK MSLGTSPKKP FQDSTVSPYF PELDTLYNDD FVNLGNGSAN TDNQANCALG  360
NG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1126131RKRKRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00552DAPTransfer from AT5G47660Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0089s0520.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2101290.0AC210129.1 Populus trichocarpa clone POP009-F11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002323120.10.0trihelix transcription factor GT-2
TrEMBLB9IH130.0B9IH13_POPTR; Uncharacterized protein
STRINGPOPTR_0016s00760.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF111123338
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47660.12e-42Trihelix family protein