PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0076s0350.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family bHLH
Protein Properties Length: 704aa    MW: 78896.3 Da    PI: 5.4532
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0076s0350.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.27.2e-14483529455
                             HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                     HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                             +h  +ErrRR+++N++f  Lr+l+P       +K++Ka+iL  ++eY+k+L+
  SapurV1A.0076s0350.1.p 483 NHVLAERRRREKLNERFIMLRSLVPFV-----TKMDKASILGDTIEYVKQLR 529
                             7999**********************8.....8*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142153.1E-569191IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.561479528IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-19481548IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-11483528IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.48E-15483533No hitNo description
Gene3DG3DSA:4.10.280.103.1E-20483546IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.4E-18485534IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010026Biological Processtrichome differentiation
GO:0010214Biological Processseed coat development
GO:2000029Biological Processregulation of proanthocyanidin biosynthetic process
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 704 aa     Download sequence    Send to blast
MATPPSSRLQ TMLQAAVQSV QWTYSLFWQM CPQQGILLWG DGYYNGPIKT RKTVQPMEVT  60
TEEASLQRSQ QLRELYDSLS IGETSQPARR PCAALSPEDL TETEWFYLMC VSFSFPPGVG  120
LPGKAYARRR HVWLTGTNEI DSKTFSRAIL AKSARVQTVV CIPLLDGVVE FGTTDKVQED  180
LGFVQHVKTF FSDHRRCHLT PPKPALSGHS TSSPATSSDH PRLHPPPIPP FYVAAEPSAN  240
AGQNDEDEEE EEEEEEEEEE EEHDSDSGAE TSRDAHLEPR QAQNPHQVAA AEPSELMQLE  300
MSEDIRLGSP DDGSNNLDSD FPVTGPDNLV DHQNRADSYR AESARRWTLL QDNPFNSGNL  360
QPSAAGKKNG PPPLEDLAQE DTHYSQTVST ILQNQALWLA AEPSFIAYEA HSHQSAFSRW  420
TISSDHLFHV SADTTSQWLL KYVLFTVPHL HGKNREENSP KSRDGEAASR FRKGTPQDEL  480
SANHVLAERR RREKLNERFI MLRSLVPFVT KMDKASILGD TIEYVKQLRQ KIQDLETSNK  540
QMESEQRPRP VDRPQRTTTS DGLKKQKSGV TVVDRARSLG PVSDKRKMRV IEDCSGGGAK  600
PKKMGVMPQP EPMFHKEPES SVEVSIIESD ALLELECGFR EGLLLDIMQM LRELRIETIT  660
VQSSLNNGIF AGELRAKVKE NVNGKKVSIV EVKRAIHQII PHD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A2e-2291929193Transcription factor MYC3
4rqw_B2e-2291929193Transcription factor MYC3
4rru_A4e-22917948219Transcription factor MYC3
4rs9_A2e-2291929193Transcription factor MYC3
4ywc_A4e-22917948219Transcription factor MYC3
4ywc_B4e-22917948219Transcription factor MYC3
4yz6_A2e-2291929193Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1487492ERRRRE
2488493RRRREK
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in the control of flavonoid pigmentation. {ECO:0000269|PubMed:20949001}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0076s0350.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ9097570.0KJ909757.1 Populus tremula x Populus tremuloides clone INRA 353-38 basic helix-loop-helix transcription factor (bHLH131) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006383662.20.0basic helix-loop-helix protein A
RefseqXP_024457395.10.0basic helix-loop-helix protein A
RefseqXP_024457396.10.0basic helix-loop-helix protein A
SwissprotE3SXU40.0BHLHW_PEA; Basic helix-loop-helix protein A
TrEMBLA0A2K2AJW00.0A0A2K2AJW0_POPTR; Uncharacterized protein
STRINGPOPTR_0002s05510.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36373249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.11e-101bHLH family protein
Publications ? help Back to Top
  1. Hellens RP, et al.
    Identification of Mendel's white flower character.
    PLoS ONE, 2010. 5(10): p. e13230
    [PMID:20949001]