PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0071s0660.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | FAR1 | ||||||||
Protein Properties | Length: 196aa MW: 22278.3 Da PI: 8.6322 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 80.7 | 2.7e-25 | 28 | 119 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 +fY+eYA+++GF vr+ + ++s +g++ r++ C+k+g++ + +++ +++r++ r gCka++ vk++k+gkw+vt++e++H SapurV1A.0071s0660.1.p 28 NFYSEYARRLGFVVRVMQRRRSGIDGRTLARRLGCNKQGFSPNIRTAagPGPDKKPRPSAREGCKATILVKMDKSGKWVVTRFEKDH 114 6***************************************998877766788999******************************** PP FAR1 86 nHela 90 nH+l+ SapurV1A.0071s0660.1.p 115 NHPLV 119 ***96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.4E-23 | 28 | 119 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 196 aa Download sequence Send to blast |
MDVEEEEKTG IVEPCVGMEF ESEDAARNFY SEYARRLGFV VRVMQRRRSG IDGRTLARRL 60 GCNKQGFSPN IRTAAGPGPD KKPRPSAREG CKATILVKMD KSGKWVVTRF EKDHNHPLVV 120 TASGFSSSGD KDKKIEELMK ELEHQEHLCA TYREKLVSFM NNVEEQTEEL ASKIQLIVDN 180 VRKVESEVQN FSRRR* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0071s0660.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011024733.1 | 1e-133 | PREDICTED: protein FAR1-RELATED SEQUENCE 5-like | ||||
Refseq | XP_011024734.1 | 1e-133 | PREDICTED: protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | B9GNH5 | 1e-131 | B9GNH5_POPTR; FAR1 family protein | ||||
STRING | POPTR_0002s24040.1 | 1e-132 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF965 | 31 | 104 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G12850.1 | 1e-68 | FAR1 family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0071s0660.1.p |