PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0069s0280.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | ERF | ||||||||
Protein Properties | Length: 417aa MW: 45461.1 Da PI: 6.8733 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.4 | 3.6e-18 | 58 | 107 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +gr++AeIrdp + r +lg+f+taeeAa a++ a+++++g SapurV1A.0069s0280.1.p 58 RYRGVRRRP-WGRYAAEIRDPQ----SkERRWLGTFDTAEEAACAYDYAALAMRG 107 59*******.**********93....35999**********************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 2.8E-29 | 58 | 114 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.708 | 58 | 115 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.0E-11 | 58 | 107 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.6E-33 | 58 | 121 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.97E-30 | 58 | 114 | No hit | No description |
SuperFamily | SSF54171 | 2.55E-21 | 58 | 115 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 2.5E-9 | 59 | 70 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.5E-9 | 81 | 97 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009880 | Biological Process | embryonic pattern specification | ||||
GO:0048825 | Biological Process | cotyledon development | ||||
GO:0051726 | Biological Process | regulation of cell cycle | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 417 aa Download sequence Send to blast |
MEEALRRLDG IPSHTLETSL HEPTIADLQK RSALTSTACT ATNKRALKES GGTGGNMRYR 60 GVRRRPWGRY AAEIRDPQSK ERRWLGTFDT AEEAACAYDY AALAMRGLKA RTNFVYPDAH 120 SATADPAHNL IPPFTNSKSS YLPSRHHNIP SSNSSLGHLH VGDFSAGGSA TQRSTSDSIA 180 STSLNMLFLR DFIHSSSGSS SHNHPQPFSD RYPCIEGSSN SDPVNFPGGS SVNPSSNTIS 240 SSFNISLADS AVTTLPHMEF HQNYTTLGDP KRADAKAEEL EFFPQEPSDS GLLQEIIQGF 300 FPKHSPDKIA SSESSGESIA APTSETIPLN QSLDGSRSGM KKYFGKNEHH DPYLGRQGRR 360 SGQLIEGSYS GVSSRELPHC NEMALINRQM GPDSILDDIF QYPDRMSAFA ARFQNV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-18 | 58 | 114 | 14 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0069s0280.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX117091 | 0.0 | JX117091.1 Populus angustifolia isolate ABOR2 clone b ERF61 (ERF61) gene, complete cds. | |||
GenBank | JX117223 | 0.0 | JX117223.1 Populus angustifolia isolate UTOC1 clone b ERF61 (ERF61) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002311764.3 | 0.0 | ethylene-responsive transcription factor ESR2 | ||||
TrEMBL | R4ISQ5 | 0.0 | R4ISQ5_9ROSI; ERF61 | ||||
STRING | POPTR_0008s19030.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4100 | 32 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G24590.1 | 2e-14 | DORNROSCHEN-like |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0069s0280.1.p |