PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0041s0190.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family GRAS
Protein Properties Length: 646aa    MW: 72816.2 Da    PI: 6.892
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0041s0190.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS366.83e-1122716413374
                    GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsP 89 
                             + L+ cA+av sgd++ a   L+++++++sp gd++qRla+yf+++L+arla+++  l++ ++ s++   + ++ l+a++l++ ++P
  SapurV1A.0041s0190.1.p 271 TMLILCAQAVGSGDQKTAGGKLKQIRQHSSPFGDANQRLAHYFANGLEARLAGTGMLLSRPISQSSA---TAADILKAYELYVTICP 354
                             57999************************************************66666655555544...59*************** PP

                    GRAS  90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgv 174
                             + k+++l aN++I + v++++ vHiiDf+i++G+QWp+++   + Rp+gp ++R+Tg++ p++g   +e++eetg+rL+++A++++v
  SapurV1A.0041s0190.1.p 355 FRKMTNLCANRTISRVVDKATSVHIIDFGIGYGFQWPCFIYRQSLRPGGPGKIRVTGIELPQPGfrPSERVEETGRRLKRLADRMKV 441
                             ***************************************************************9*********************** PP

                    GRAS 175 pfefnvlvakrledleleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfle 259
                             pfe+n+ +a+++e++++++L++++  +E+++Vn++++l++l+d++v ++s+rd+vLklvk+++P+++ +   + ++ns+ F +rf e
  SapurV1A.0041s0190.1.p 442 PFEYNA-IAQKWETIQYDDLKIDRdrDEVIIVNCMYRLKNLPDDTVVVNSPRDDVLKLVKRINPDIFLHGVINGSYNSPFFDTRFRE 527
                             ******.7**************9999************************************************************* PP

                    GRAS 260 aleyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvks 346
                             al +ysa+fd+lea++pre++er + Ere++gr++ nv+aceg++r+er e +++W+ r  + GF++vpl +++ k +k + + +++
  SapurV1A.0041s0190.1.p 528 ALFHYSAFFDMLEANAPREDQERLMFEREMIGRDAINVIACEGTQRVERPEPYKQWQTRNLRIGFRQVPLHQSIIKRVKNVKHDYHK 614
                             **************************************************************************************7 PP

                    GRAS 347 dgyrveeesgslvlgWkdrpLvsvSaWr 374
                             d + v+e+ ++++lgWk++ + ++SaW+
  SapurV1A.0041s0190.1.p 615 D-FIVDEDGQWILLGWKGKIVHAISAWK 641
                             7.*************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098561.23243622IPR005202Transcription factor GRAS
PfamPF035141.0E-109271641IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 646 aa     Download sequence    Send to blast
MDPPSYPTNL QAPADNPSLR SASDGDSPLD SETIDCYHAV LKYIHDILME DGLGDKTCML  60
QDSLALQAAE KSLYDVIGEE YPSSSDHLPP CLIHINERQD ENLTPARSVQ SSVTQPFDSP  120
ESMPYGQFNG VMGSASKSLP YSHSIKFSST KNVSDPLELE GEVMGGDIIQ KNGRGCSSIQ  180
TRGRRNHQHD NNGYLEEGRS KKQSSASESL HLELLDDTFL YNIENGGHIP CPLYGNSRGA  240
RSRKFLQSEQ LAAADTRTRK LANETETDLW TMLILCAQAV GSGDQKTAGG KLKQIRQHSS  300
PFGDANQRLA HYFANGLEAR LAGTGMLLSR PISQSSATAA DILKAYELYV TICPFRKMTN  360
LCANRTISRV VDKATSVHII DFGIGYGFQW PCFIYRQSLR PGGPGKIRVT GIELPQPGFR  420
PSERVEETGR RLKRLADRMK VPFEYNAIAQ KWETIQYDDL KIDRDRDEVI IVNCMYRLKN  480
LPDDTVVVNS PRDDVLKLVK RINPDIFLHG VINGSYNSPF FDTRFREALF HYSAFFDMLE  540
ANAPREDQER LMFEREMIGR DAINVIACEG TQRVERPEPY KQWQTRNLRI GFRQVPLHQS  600
IIKRVKNVKH DYHKDFIVDE DGQWILLGWK GKIVHAISAW KPAQE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A4e-452736418375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0041s0190.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002299864.20.0scarecrow-like protein 30
SwissprotQ9XE581e-162SCL14_ARATH; Scarecrow-like protein 14
TrEMBLB9GJL70.0B9GJL7_POPTR; Uncharacterized protein
STRINGPOPTR_0001s24880.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.11e-162SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]