PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0034s0060.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | C2H2 | ||||||||
Protein Properties | Length: 298aa MW: 32093.5 Da PI: 9.8294 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.2 | 0.00027 | 108 | 130 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++ Fs++ L H++ H SapurV1A.0034s0060.1.p 108 FSCSFCKREFSTSQALGGHQNAH 130 89******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.56E-6 | 105 | 135 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 5.8E-4 | 106 | 134 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 11.552 | 108 | 135 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 110 | 130 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 298 aa Download sequence Send to blast |
MESSGTEKSP SEGSSISATS EGAPRRDGGD LDRTKMAPRM KEKVVGGSEP ALLSEASARV 60 LLDLKLSGDS SIRGSKLEFN LFSPMSVGSS HAKESIDETS RQAESRVFSC SFCKREFSTS 120 QALGGHQNAH KQERALAKRR REMGASAIGQ YLPYYYPYSS SLSANPNYGS LNRSLGVRMD 180 SFIHKTSPYS WTSPAGGHRY GGHSGWLRQT LMNTQPSIDR LRAQSLSSFC GGFGTSTTSS 240 SPRFDGNGLV RNNFGASPSS NNVVAIRKPP VTDHIQQNNP PKNDQTDESG LDLSLKL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0034s0060.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006389432.1 | 1e-175 | uncharacterized protein LOC18111080 | ||||
TrEMBL | U7E2Y1 | 1e-174 | U7E2Y1_POPTR; Zinc finger family protein | ||||
STRING | POPTR_0025s00650.1 | 1e-174 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1822 | 30 | 74 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G01860.1 | 8e-20 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0034s0060.1.p |