PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0032s0620.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

NAC

Protein Properties

Length: 313aa MW: 35278.3 Da PI: 6.8811

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0032s0620.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	108.8	6.4e-34	61	201	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk 79 lp+G++F+Ptd+e++ +L++kv ++k ++++ i+ +i++++P++Lp v+++ + +fF++ +k+y+tg+rk+r+++ SapurV1A.0032s0620.1.p 61 LPAGVKFDPTDQEIL-GHLEAKVLSDKrklhplIDEFIPsIEGEnGICYTHPENLP-GVSNDGQIRHFFHRPSKAYTTGTRKRRKVH 145 799*********9.789999988885665543333333665557******.566667778**************744 PP NAM 80 ......sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + +W++tgk+++v++ +g+++g kk+Lv+y gr++k+ekt+Wvmh+y+l SapurV1A.0032s0620.1.p 146 tdedgsETRWHKTGKTRQVFA-GGTVKGFKKILVLYtnYGRQRKPEKTNWVMHQYHL 201 446555788********.99********66589************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.53E-38	53	220	IPR003441	NAC domain
PROSITE profile	PS51005	34.126	61	220	IPR003441	NAC domain
Pfam	PF02365	2.0E-15	62	201	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 313 aa Download sequence Send to blast
MTWCSNNSVY ERAFQLVTSS SKEDAFVEAE TDEIPRISCP SCGHNFEVQD QVGIIHDLPG 60 LPAGVKFDPT DQEILGHLEA KVLSDKRKLH PLIDEFIPSI EGENGICYTH PENLPGVSND 120 GQIRHFFHRP SKAYTTGTRK RRKVHTDEDG SETRWHKTGK TRQVFAGGTV KGFKKILVLY 180 TNYGRQRKPE KTNWVMHQYH LGNNEEEKDG ELVVSKIFYQ TQPRQCSSSI KDSSLDHKSS 240 NQSDDHADNH PLAKNSTDLL DFCNPSYISY DPGNYSSEIP PQFLPNLVVQ GDGSSFIRLA 300 AETSKGKLQR KW*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269\|PubMed:18952777, ECO:0000269\|PubMed:22133261}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0032s0620.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KP770009	0.0	KP770009.1 UNVERIFIED: Populus tomentosa MYB transcription factor R2R3 type-like (Potri.011G058400) mRNA, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011001220.1	0.0	PREDICTED: NAC domain-containing protein 8-like
Swissprot	O49459	1e-117	NAC73_ARATH; NAC domain-containing protein 73
TrEMBL	A0A3N7H7P6	0.0	A0A3N7H7P6_POPTR; Uncharacterized protein
STRING	POPTR_0011s05740.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1228	34	108

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28500.1	1e-120	NAC domain containing protein 73

Link Out ? help Back to Top
Phytozome	SapurV1A.0032s0620.1.p

Publications ? help Back to Top
Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE CressExpress: a tool for large-scale mining of expression data from Arabidopsis. Plant Physiol., 2008. 147(3): p. 1004-16 [PMID:18467456] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195] Jervis J, et al. A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood. Phytochemistry, 2015. 115: p. 112-20 [PMID:25771508]