PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0024s0300.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

HD-ZIP

Protein Properties

Length: 817aa MW: 88870.9 Da PI: 6.2147

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0024s0300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	65.4	7.9e-21	116	171	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++eLe+lF+++++p++++r eL+++l L++rqVk+WFqNrR+++k SapurV1A.0024s0300.1.p 116 KKRYHRHTPQQIQELEALFKECPHPDEKQRLELSRRLCLETRQVKFWFQNRRTQMK 171 688999***********************************************999 PP
2	START	193.6	9.2e-61	326	551	1	206
HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S. CS START 1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla. 77 ela++a++elvk+a+a+ep+W s e++n +e l++f++ + + ea+r++g+v+ ++ lve+l+d+ +W e+++ SapurV1A.0024s0300.1.p 326 ELALAAMDELVKMAQADEPLWIGSFeggrEILNHEEHLRSFTPCIGmkpsgFVREASRETGMVIINSLALVETLMDSD-RWAEMFPc 411 5899****************9999***********9998899999999********************.**** PP ...EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--..-TTSEE-EESSEEEE CS START 78 ...kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.sssvvRaellpSgil 153 + +t++vi sg g lqlm aelq+l+plvp R++ f+R+++q+ +g+w++vdvS+d ++ + + + +++lpSg++ SapurV1A.0024s0300.1.p 412 miaRTSTTDVIASGmggtrnGSLQLMHAELQVLTPLVPvREVNFLRFCKQHAEGVWAVVDVSIDAIRETSGaPPTFLNCRRLPSGCV 498 *************************************************************9999998999******** PP EEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 154 iepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 +++++ng+skvtwveh++++++++h+l+r+l++sg+ +ga++w atlqrqce+ SapurV1A.0024s0300.1.p 499 VQDMPNGYSKVTWVEHAEYDESQVHQLYRPLISSGMGFGAQRWIATLQRQCEC 551 *************************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.28E-20	102	173	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	5.6E-22	103	173	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.216	113	173	IPR001356	Homeobox domain
SMART	SM00389	1.7E-17	114	177	IPR001356	Homeobox domain
CDD	cd00086	2.01E-18	115	173	No hit	No description
Pfam	PF00046	2.2E-18	116	171	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	148	171	IPR017970	Homeobox, conserved site
PROSITE profile	PS50848	43.618	317	554	IPR002913	START domain
SuperFamily	SSF55961	8.24E-33	319	551	No hit	No description
CDD	cd08875	1.88E-124	321	550	No hit	No description
SMART	SM00234	1.9E-43	326	551	IPR002913	START domain
Pfam	PF01852	1.8E-52	326	551	IPR002913	START domain
SuperFamily	SSF55961	3.52E-23	580	809	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 817 aa Download sequence Send to blast
MSFGGFLENT SPGGGGGARF VADIPYNNNN NMSTGAIAQT RLVSPSITKS MFNSPGLSLA 60 LQQPNIDGQG DISRMAENFE ASVGRRSREE EHESRSGSDN MDGASGDDQD DNPPRKKRYH 120 RHTPQQIQEL EALFKECPHP DEKQRLELSR RLCLETRQVK FWFQNRRTQM KTQLERHENS 180 LLRQDNDKLR AENMSIRDAM RNPSCSNCGG PAIIGDISLE EQHLRIENAR LKDELDRVCA 240 LAGKFLGRPI SSLASPLGPP MPNSSLELAV GSNGFAGMST VATTLPLGPH FEGGISGALP 300 MVTQTRLATA GVPGTDRSLE RSMFLELALA AMDELVKMAQ ADEPLWIGSF EGGREILNHE 360 EHLRSFTPCI GMKPSGFVRE ASRETGMVII NSLALVETLM DSDRWAEMFP CMIARTSTTD 420 VIASGMGGTR NGSLQLMHAE LQVLTPLVPV REVNFLRFCK QHAEGVWAVV DVSIDAIRET 480 SGAPPTFLNC RRLPSGCVVQ DMPNGYSKVT WVEHAEYDES QVHQLYRPLI SSGMGFGAQR 540 WIATLQRQCE CLAILMSSNV PSRDHTAITT SGRRSMLKLA QRMTGNFCAG VCASTVHKWN 600 KLNAGNVDED VRVMTRKSVD DPGEPPGIVL SAATSVWLPV SPQRLFDFLR NERLRSEWDI 660 LSNGGPMQEM AHIAKGQDHG NCVSLLRASA MNASQSSMLI LQETCIDAAG SLVVYAPVDT 720 PAMHVVMNGG DSAYVALLPS GFAIVPDGPQ TTSGDPTTHN NGGGQERVGG SLLTVAFQIL 780 VNSLPTAKLT VESVETVKNL ISCTVQKIKA ALQCES*

Sequence ? help Back to Top

Protein Sequence Length: 817 aa Download sequence Send to blast

MSFGGFLENT SPGGGGGARF VADIPYNNNN NMSTGAIAQT RLVSPSITKS MFNSPGLSLA  60
LQQPNIDGQG DISRMAENFE ASVGRRSREE EHESRSGSDN MDGASGDDQD DNPPRKKRYH  120
RHTPQQIQEL EALFKECPHP DEKQRLELSR RLCLETRQVK FWFQNRRTQM KTQLERHENS  180
LLRQDNDKLR AENMSIRDAM RNPSCSNCGG PAIIGDISLE EQHLRIENAR LKDELDRVCA  240
LAGKFLGRPI SSLASPLGPP MPNSSLELAV GSNGFAGMST VATTLPLGPH FEGGISGALP  300
MVTQTRLATA GVPGTDRSLE RSMFLELALA AMDELVKMAQ ADEPLWIGSF EGGREILNHE  360
EHLRSFTPCI GMKPSGFVRE ASRETGMVII NSLALVETLM DSDRWAEMFP CMIARTSTTD  420
VIASGMGGTR NGSLQLMHAE LQVLTPLVPV REVNFLRFCK QHAEGVWAVV DVSIDAIRET  480
SGAPPTFLNC RRLPSGCVVQ DMPNGYSKVT WVEHAEYDES QVHQLYRPLI SSGMGFGAQR  540
WIATLQRQCE CLAILMSSNV PSRDHTAITT SGRRSMLKLA QRMTGNFCAG VCASTVHKWN  600
KLNAGNVDED VRVMTRKSVD DPGEPPGIVL SAATSVWLPV SPQRLFDFLR NERLRSEWDI  660
LSNGGPMQEM AHIAKGQDHG NCVSLLRASA MNASQSSMLI LQETCIDAAG SLVVYAPVDT  720
PAMHVVMNGG DSAYVALLPS GFAIVPDGPQ TTSGDPTTHN NGGGQERVGG SLLTVAFQIL  780
VNSLPTAKLT VESVETVKNL ISCTVQKIKA ALQCES*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269\|PubMed:10402424}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0024s0300.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011023404.1	0.0	PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2-like isoform X1
Swissprot	Q0WV12	0.0	ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
TrEMBL	A0A385JHT9	0.0	A0A385JHT9_POPTO; Homeodomain protein
TrEMBL	B9GPV9	0.0	B9GPV9_POPTR; Uncharacterized protein
STRING	POPTR_0002s15610.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1192	34	106

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00730.1	0.0	HD-ZIP family protein

Link Out ? help Back to Top
Phytozome	SapurV1A.0024s0300.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]