PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0023s0240.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB
Protein Properties Length: 1689aa    MW: 185875 Da    PI: 6.3915
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0023s0240.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.94.8e-08803844346
                             SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
         Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                             +WT +E e++ + ++ +G++ +++Ia+ +  +++  +c+++++k
  SapurV1A.0023s0240.1.p 803 PWTSDEKEIFMQKIATFGKD-FRKIASFLD-HKSTADCVEFYYK 844
                             8*****************99.*********.***********98 PP
2Myb_DNA-binding31.44.4e-1010021042345
                              SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
         Myb_DNA-binding    3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45  
                               WT eE  ++++av  +G++ ++ I+r +  +Rt+ qck ++ 
  SapurV1A.0023s0240.1.p 1002 DWTDEEKSIFIQAVSSYGKD-FTMISRVVR-TRTRDQCKVFFS 1042
                              5*****************99.*********.********8776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.97E-14787847IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.6E-5795845IPR009057Homeodomain-like
PROSITE profilePS5129315.52799850IPR017884SANT domain
SMARTSM007178.8E-8800848IPR001005SANT/Myb domain
PfamPF002497.2E-6803844IPR001005SANT/Myb domain
PROSITE profilePS5129311.39971049IPR017884SANT domain
SMARTSM007172.4E-89991047IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-610001043IPR009057Homeodomain-like
PfamPF002491.1E-710021042IPR001005SANT/Myb domain
CDDcd001672.25E-710031041No hitNo description
SuperFamilySSF466891.95E-1010031049IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1689 aa     Download sequence    Send to blast
MPPEPLPWDR KDCFKERKHE RSETTSSSFG GGSTPRWREF SFSSSSNNGS PCDFNRWGPH  60
DFRRPPGHGK QGGWHMLSEE SGHVFSPYRM SDKMLEDENC RLFSRGDGRY GRNNRENRGC  120
FSQRDWRGGH SWEMINGSPN MPARQRDVNN DQRSFDEMLM YPPSHPAHSE FANSWDHHQL  180
KDQDDNNKMG DVVSLGTDQR GDKEIPLDWK PLKWTRSGSL SSRGSGFSHS SSSKSLGGAD  240
SNEGKTELQP KNASPVQPPS VDAAACVTSA TPSEEVSSRK KARLGWGEGL AKYEKKKVEG  300
PDASENKDGA AVSAINMEPI HFLTSNLADK SPRVMGFSDC ASPATPSSVA CSSSPGLEEK  360
TFLKSTNADN VASNLCGSPS VGSQSHIEGL SFNLEKMDVG SIGNLGSSLA ELLQSDDPSS  420
MDSGFMRPTA MNKLLVWKGD LSKALELTES EIDSLENELK SMKFEYGSRC PCPAASTPLF  480
VSDVKPCNVQ GVASNSVPRP SPLQVASHGD GIVEKVSFYN GGLEVHGDVK DNDIDSPGTA  540
TSKLVEPLCL VRIDSSSFVL KNDFDGIQSA RMGLKVSVPC ADDEETGVFA SKDSVPSSVD  600
VISDTNGEDN LCSLILASNK ESASGASEVF NKLLPSDQCK FDFSAVTNGS SLQTDDLVVK  660
KIAKRKRLLR FKEIAVTLKF KALQHLWKED MQLLSIRKYR VKSQKKCEPI LRTTHSGYQK  720
HRSSIRARLS SPAGNLSLVP TTETLNFTSK LLSDSQVRPY RNALKMPAII LDKKEKMVSR  780
FISSNGLVED PYAVEKERAM INPWTSDEKE IFMQKIATFG KDFRKIASFL DHKSTADCVE  840
FYYKNHKSDC FEKTKKSEQT KTSTNYLMAS STKWNRELNA ASLDILGVAS RIAADADHAM  900
NSKQLCSGRI FSRGYRSSKI TEGDDVLRNE RETVAADVLG SLSSEAMSSC ITTSVDLMEG  960
YHEWKYQKAD FVAKAPSTSD VMQSFDEETC SDESCGEMDR IDWTDEEKSI FIQAVSSYGK  1020
DFTMISRVVR TRTRDQCKVF FSKARKCLGL DLMHPGTKNS RTPVGDDASG GGSDTEDACA  1080
MGTRSAICSD KLDSKIDEVL PSSILNTDRD ESDAEQMIGL HEDLNRTEGN NAPGVLDKND  1140
SKVDKNDFKV VDEMVSDPSE AGQSVDLSSD VDSKFKNAVH QSESVTQKML IVSANAESER  1200
DQVVDKGVSD VESGSVIGAV DVSTSNANNA VELKAAAEVS DSTSNASHHP LHMDSCSEFS  1260
RGSENMHQVS DQLEPVENPP VILLPQENNL AITKSMLQDS AVIQFEKRRK QDTLQESNGD  1320
KEGKISVSRD DYFEHLSDHP LLSHNEPSQI LRGYPLQNPT KKEMNGVISG RHLSGAQSLP  1380
NPEKVTSQFE AQEYYLQKCS SLKAQHSVPE LPFLSQHHGR GSDHPRDHSR RLPDVEKSCR  1440
NGDVKLFGKI LTTPLQKQNA SAHENDEKEA QHLKPTSKSA TFKFTGHRPK EGNMALLKCD  1500
PNNQLTLENV PMRSYGFWDG NRIQTRFPSM PDSAALLVKY PAAFSNYHMS SSKMPQQTLQ  1560
AAVKSNERNL NGISVFPSRE VTGSNGVVDY QMHRSHDSTG VAPFTVDMKQ REDILAEMQR  1620
LNGQQPRGMA GVNVVGRGGI LVGGACTGVS DPVVAIKRHY AKADQYGGQS GIVFREEESW  1680
RGKRDIGR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4a69_C2e-14761852494NUCLEAR RECEPTOR COREPRESSOR 2
4a69_D2e-14761852494NUCLEAR RECEPTOR COREPRESSOR 2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0023s0240.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002316354.20.0uncharacterized protein LOC7468404 isoform X1
RefseqXP_024466716.10.0uncharacterized protein LOC7468404 isoform X1
TrEMBLB9HU460.0B9HU46_POPTR; Uncharacterized protein
STRINGPOPTR_0010s22670.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49863352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52250.10.0MYB family protein