PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0022s0600.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

MYB_related

Protein Properties

Length: 1165aa MW: 129347 Da PI: 8.2898

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0022s0600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	28.6	3.3e-09	46	81	3	40
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 W +eE e++++a +++G++ W+++a+ + +R+l+++ SapurV1A.0022s0600.1.p 46 QWGKEELERFYKAYRKHGKD-WEKVAAVVR-NRSLEML 81 6***************99.*****.*9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51293	9.677	42	93	IPR017884	SANT domain
SMART	SM00717	7.9E-5	43	91	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.17E-8	43	91	IPR009057	Homeodomain-like
Pfam	PF00249	3.8E-7	46	79	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	5.8E-4	46	77	IPR009057	Homeodomain-like
CDD	cd00167	9.76E-6	47	89	No hit	No description
SMART	SM01135	8.5E-54	623	724	IPR033471	DIRP domain
Pfam	PF06584	2.2E-31	623	723	IPR033471	DIRP domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005730	Cellular Component	nucleolus
GO:0016592	Cellular Component	mediator complex
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1165 aa Download sequence Send to blast
MAPSRKRSVN KRYSNVNEVT STKNVPVTAN KSKPRKRKLS EMLGPQWGKE ELERFYKAYR 60 KHGKDWEKVA AVVRNRSLEM LEALYTMNKA YLSLPKGFAS AAGLIAMMTD HYSNLVRLGE 120 SDSEIESNGG TGTSQKSQKR ARVTKGSDAP PVPDLLQSQP AASSYGCLSL LKKRRSGSKP 180 WAVGKRTPRV PVTYSYDKYS EEKYVSPIRQ GFKVKADAVD DDVAHEIALA LTEASQRGGS 240 PQVSQTPKRK TKMPSRAQHD EQMHAESEMM SAKLRGSEVE EVGCELSLGS TEADVVDYVR 300 DESSWKGKRY HGRRPLAENL DDHLDDVREA CSGTEEGQKL DAAEELFEME VADTKLLRPS 360 KGPRKRSKKV LFGEVEDADF DALEALADLS LRLPETPVDT GSSVYVEEEK TRIVAKSKLK 420 GNHSSPGVKP ISFKTTKQGK VFTHNASSIQ EAKDAAHQFI PVMRKRRQKH LPSKISENDE 480 HADSYLGESQ KVEVKTDDNN LLSKGKRSQY AACSKQGKLM KPAERTSSSN NHGKELNNSA 540 PTTIQVLSAS QFNLPTKVRS SRKLNTPKML VERDSKSSEN IIVNSQSNTL IPSSQDRVLD 600 LKGKLSNCLS RYLVRRWCVY EWFYSAIDYP WFSRREFVEY LEHVRLGHIP RLTRVEWGVI 660 RSSLGKPRRL SEQFLKEEKE KLNHYRESVR EHYAELRTGT REGLPTDLAR PLSVGQRIIA 720 LHPSTSEIHD GSVLTVDHSR CRVQFDRPEL GVEFVMDVDC MPLNPVDNMP ASMIGHSIAL 780 NRYIKNLNEL KISGQPAEKK TEGFKFSPCE NLEDNSALPH SSPSTYHCSV LLQQPMGGLG 840 GSNTQVKNGG ETVNTQQATS VHPSFCAQIQ AKEADIHALS ELTRALNKKE AVVSELKYMN 900 DEVLESQKHG EKSLKDSEAF KKHYAAVLLQ LNEVNEQVSA ALFFLRQRNT YQGNIPHVLS 960 MSMPNIDEPA CHSSSFDSSG DDTQESGSHV VEIVESSRTK AQTMVDAAMQ AMSSLKTEGS 1020 SIESIEDAID FVNNKLLADD LSVPAIRSPV PASAVQDTPA SQDQSSSCVA NPGAINHAPD 1080 AKWNSSSNEN EVQIPSELIS HCVATLLMIQ KCTERQFPPS HVAQVLDSAV TSLKPCCPVN 1140 LPIYAEIQKF MGIIKNQILA LVPT*

Sequence ? help Back to Top

Protein Sequence Length: 1165 aa Download sequence Send to blast

MAPSRKRSVN KRYSNVNEVT STKNVPVTAN KSKPRKRKLS EMLGPQWGKE ELERFYKAYR  60
KHGKDWEKVA AVVRNRSLEM LEALYTMNKA YLSLPKGFAS AAGLIAMMTD HYSNLVRLGE  120
SDSEIESNGG TGTSQKSQKR ARVTKGSDAP PVPDLLQSQP AASSYGCLSL LKKRRSGSKP  180
WAVGKRTPRV PVTYSYDKYS EEKYVSPIRQ GFKVKADAVD DDVAHEIALA LTEASQRGGS  240
PQVSQTPKRK TKMPSRAQHD EQMHAESEMM SAKLRGSEVE EVGCELSLGS TEADVVDYVR  300
DESSWKGKRY HGRRPLAENL DDHLDDVREA CSGTEEGQKL DAAEELFEME VADTKLLRPS  360
KGPRKRSKKV LFGEVEDADF DALEALADLS LRLPETPVDT GSSVYVEEEK TRIVAKSKLK  420
GNHSSPGVKP ISFKTTKQGK VFTHNASSIQ EAKDAAHQFI PVMRKRRQKH LPSKISENDE  480
HADSYLGESQ KVEVKTDDNN LLSKGKRSQY AACSKQGKLM KPAERTSSSN NHGKELNNSA  540
PTTIQVLSAS QFNLPTKVRS SRKLNTPKML VERDSKSSEN IIVNSQSNTL IPSSQDRVLD  600
LKGKLSNCLS RYLVRRWCVY EWFYSAIDYP WFSRREFVEY LEHVRLGHIP RLTRVEWGVI  660
RSSLGKPRRL SEQFLKEEKE KLNHYRESVR EHYAELRTGT REGLPTDLAR PLSVGQRIIA  720
LHPSTSEIHD GSVLTVDHSR CRVQFDRPEL GVEFVMDVDC MPLNPVDNMP ASMIGHSIAL  780
NRYIKNLNEL KISGQPAEKK TEGFKFSPCE NLEDNSALPH SSPSTYHCSV LLQQPMGGLG  840
GSNTQVKNGG ETVNTQQATS VHPSFCAQIQ AKEADIHALS ELTRALNKKE AVVSELKYMN  900
DEVLESQKHG EKSLKDSEAF KKHYAAVLLQ LNEVNEQVSA ALFFLRQRNT YQGNIPHVLS  960
MSMPNIDEPA CHSSSFDSSG DDTQESGSHV VEIVESSRTK AQTMVDAAMQ AMSSLKTEGS  1020
SIESIEDAID FVNNKLLADD LSVPAIRSPV PASAVQDTPA SQDQSSSCVA NPGAINHAPD  1080
AKWNSSSNEN EVQIPSELIS HCVATLLMIQ KCTERQFPPS HVAQVLDSAV TSLKPCCPVN  1140
LPIYAEIQKF MGIIKNQILA LVPT*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	33	38	PRKRKL
2	462	467	MRKRRQ

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0022s0600.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024463377.1	0.0	protein ALWAYS EARLY 3 isoform X1
Swissprot	Q6A332	0.0	ALY3_ARATH; Protein ALWAYS EARLY 3
TrEMBL	A0A2K1ZL81	0.0	A0A2K1ZL81_POPTR; Uncharacterized protein
STRING	POPTR_0008s22660.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1783	33	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	0.0	DNA binding

Link Out ? help Back to Top
Phytozome	SapurV1A.0022s0600.1.p

Publications ? help Back to Top
Pfaff C, et al. ALY RNA-Binding Proteins Are Required for Nucleocytosolic mRNA Transport and Modulate Plant Growth and Development. Plant Physiol., 2018. 177(1): p. 226-240 [PMID:29540591]