PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | SapurV1A.0022s0560.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 475aa MW: 50213 Da PI: 8.4436 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 35.6 | 1.6e-11 | 51 | 74 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 C++++rtG+C yG+rC+++H++ SapurV1A.0022s0560.1.p 51 QDCMYYLRTGICGYGARCRYNHPR 74 68********************96 PP | |||||||
2 | zf-CCCH | 41.3 | 2.5e-13 | 96 | 120 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++lC++++rtGtCk+G++Ck++H++ SapurV1A.0022s0560.1.p 96 QPLCQYYMRTGTCKFGASCKYHHPK 120 79*********************96 PP | |||||||
3 | zf-CCCH | 35.6 | 1.6e-11 | 140 | 166 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C ++ +tG+Ck+G++CkF+H++ SapurV1A.0022s0560.1.p 140 PGERECTYYIKTGQCKFGATCKFHHPQ 166 5789*********************97 PP | |||||||
4 | zf-CCCH | 26.4 | 1.2e-08 | 302 | 328 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+++ ++G Ck+ ++C+++H+p SapurV1A.0022s0560.1.p 302 PGQPECQYYIKNGDCKFRSSCRYHHPP 328 5789*********************97 PP | |||||||
5 | zf-CCCH | 29.4 | 1.3e-09 | 349 | 371 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 + C ++ + G+Ck+G+ CkF+H+ SapurV1A.0022s0560.1.p 349 PTCTHYTQRGQCKFGSACKFNHP 371 78********************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 2.7E-6 | 47 | 74 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.014 | 47 | 75 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.35E-6 | 49 | 76 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.2E-9 | 50 | 74 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.4E-5 | 53 | 74 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.5E-7 | 93 | 120 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.089 | 93 | 121 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.96E-6 | 94 | 120 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 8.0E-11 | 96 | 120 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.6E-5 | 98 | 119 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.4E-4 | 139 | 166 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.934 | 139 | 167 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.7E-8 | 141 | 166 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.1E-6 | 142 | 167 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.2E-4 | 145 | 165 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0042 | 301 | 328 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.483 | 301 | 329 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF14608 | 0.59 | 307 | 327 | No hit | No description |
SMART | SM00356 | 2.9E-5 | 345 | 372 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.633 | 345 | 373 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.09E-5 | 349 | 375 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.6E-7 | 349 | 371 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.7E-4 | 351 | 371 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 475 aa Download sequence Send to blast |
MDRYGRAQEG SQPDPALEWT GSGPETGLEE GVWQLGLGEA ESEYPERPNE QDCMYYLRTG 60 ICGYGARCRY NHPRDRSAVL GPARVGGVEY PERVGQPLCQ YYMRTGTCKF GASCKYHHPK 120 QGGGSASPVL LNYYGYPLRP GERECTYYIK TGQCKFGATC KFHHPQPGNI QIPAQSPAPQ 180 IAPVPGPTLY PSVQSPSVPS SQQYGVMVAR PPLLPGSYVQ GPYGTVLLSP SVVPYPSWSP 240 YPAPGSPVAS PNTQPAVSSG SVYGMSPLSP SAPAYTGAFQ YTPPATGPSS STQKEHLFPE 300 RPGQPECQYY IKNGDCKFRS SCRYHHPPEL VAPNVVLSPI GLPLRPGAPT CTHYTQRGQC 360 KFGSACKFNH PIGTLSYSPS ASSLADMPVA PYLVGSSIGT LAPSSSSSDL RSKPVSGPGK 420 DSSSTRLSSS TSAPSGSVGS IFSKSGPAPH SNVQQSDWSS GPSTSSSSGT HSSI* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | SapurV1A.0022s0560.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC182669 | 1e-152 | AC182669.2 Populus trichocarpa clone Pop1-21I14, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006380188.1 | 0.0 | zinc finger CCCH domain-containing protein 34 | ||||
Swissprot | Q6NPN3 | 1e-159 | C3H58_ARATH; Zinc finger CCCH domain-containing protein 58 | ||||
TrEMBL | B9N500 | 0.0 | B9N500_POPTR; Uncharacterized protein | ||||
STRING | cassava4.1_006608m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF983 | 34 | 117 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G18550.1 | 1e-136 | C3H family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | SapurV1A.0022s0560.1.p |
Publications ? help Back to Top | |||
---|---|---|---|
|