PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0014s1240.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB
Protein Properties Length: 491aa    MW: 55078.2 Da    PI: 6.929
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0014s1240.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.83.7e-163279148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                            +g+WT  Ed +l+++vk++G g+W+++ +  g+ R++k+c++rw ++l
  SapurV1A.0014s1240.1.p 32 KGPWTVAEDAILIEYVKKHGEGNWNSVQKNCGLMRCGKSCRLRWANHL 79
                            79******************************************9986 PP
2Myb_DNA-binding53.84.3e-1785128146
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                             +g++TteE+++++++++++G++ W++ a+ ++ gRt++++k++w +
  SapurV1A.0014s1240.1.p  85 KGSFTTEEEQIIIELHAKHGNK-WARMASQLP-GRTDNEIKNYWKT 128
                             799*******************.*********.***********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.9E-242582IPR009057Homeodomain-like
PROSITE profilePS5129417.5282779IPR017930Myb domain
SuperFamilySSF466891.2E-3029126IPR009057Homeodomain-like
SMARTSM007172.8E-133181IPR001005SANT/Myb domain
PfamPF002495.4E-153279IPR001005SANT/Myb domain
CDDcd001672.23E-113479No hitNo description
PROSITE profilePS5129425.68880134IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.1E-2583132IPR009057Homeodomain-like
SMARTSM007171.0E-1684132IPR001005SANT/Myb domain
PfamPF002491.1E-1585128IPR001005SANT/Myb domain
CDDcd001672.72E-1287128No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    Send to blast
MMSNWSCSSI NRAVVESGRA PPPKGDNQGL KKGPWTVAED AILIEYVKKH GEGNWNSVQK  60
NCGLMRCGKS CRLRWANHLR PNLKKGSFTT EEEQIIIELH AKHGNKWARM ASQLPGRTDN  120
EIKNYWKTRM KRHQRAGLPI YPQDFQAKTA AFRFHHQQDD RRAQPNSTSL SSTPYNLCFS  180
LLDPINRFAT PLNPLQNQLS PIGFYPNPSH QLKLFANTNS NDGCLPLSFP PVSSYQQSPL  240
STNLFRQNPT RKAVPKNTPP SALIYNDVDM ETKMSFTSLI MGDQVQPIGY IPGLTPEQPS  300
DQTPPGPTTS RGGACFEEET NKSNNNDYSN SETSQQGMPG NMNNSGLLDA LLQEAKTVSF  360
RGKPSSDDFL LASNEGKRAM DSSVEEEDVE EEATKRVKLL LRNGSEYSCG EKLWDDLSSS  420
QSSNIWTKPS EEAVDQELNS MDDDIISLLN NFPSSEPLPE WYRQSRNERN SNRQSYGGIN  480
IVDDNRDPRR *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-28301325106B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0014s1240.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011006466.10.0PREDICTED: uncharacterized protein LOC105112461
TrEMBLA0A2K2BMY50.0A0A2K2BMY5_POPTR; Uncharacterized protein
STRINGPOPTR_0002s21300.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF99493240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32460.15e-78myb domain protein 101