PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0012s0710.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family NAC
Protein Properties Length: 369aa    MW: 42249.2 Da    PI: 8.5423
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0012s0710.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM108.48.5e-341182581128
                     NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk 79 
                             lp+G++F+Ptd+e++ e+L++kv ++       ++++ + i+   +i++++P++Lp  v+++ +  +fF++ +k+y+tg+rk+r+++
  SapurV1A.0012s0710.1.p 118 LPAGVKFDPTDQEIL-EHLEAKVLSDMrklhplIDEFITtIEGEnGICYTHPEKLP-GVSNDGQIRHFFHRPSKAYTTGTRKRRKVH 202
                             799***********9.99****998886676553333333766657**********.566667778******************744 PP

                     NAM  80 ......sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                                   + +W++tgk+++v++ +g+++g kk+Lv+y   gr++k+ekt+Wvmh+y+l
  SapurV1A.0012s0710.1.p 203 tdedgsETRWHKTGKTRSVFA-GGTVKGFKKILVLYtnYGRQRKPEKTNWVMHQYHL 258
                             446555788************.99************66589**************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.4E-38111277IPR003441NAC domain
PROSITE profilePS5100533.946118277IPR003441NAC domain
PfamPF023652.5E-15119258IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MFIQCTEINH GSRKRSRRIK FPCVTYTDQD SQAWRWPEET RRRIRLCDGN RRKNIEMTWC  60
NNNSEDDGVM IQLVTSNPKE DTFVDAKTDE TRRINCPSCG HNFEIQDQGG IIHDLPGLPA  120
GVKFDPTDQE ILEHLEAKVL SDMRKLHPLI DEFITTIEGE NGICYTHPEK LPGVSNDGQI  180
RHFFHRPSKA YTTGTRKRRK VHTDEDGSET RWHKTGKTRS VFAGGTVKGF KKILVLYTNY  240
GRQRKPEKTN WVMHQYHLGN NEEEKDGELV VSKVFYQTQP RQCNSSMKDS IDNKSTNQSG  300
VIDNVHSLDK NSTGLLQYYN STYITYDHGN HSSEIPPQFL PNVAVQGDGS SYIRLAADTS  360
KGKLQRKQ*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0012s0710.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP7700140.0KP770014.1 Populus tomentosa NAC transcription factor (Potri.004G049300) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006384048.20.0NAC domain-containing protein 73
RefseqXP_024454301.10.0NAC domain-containing protein 73
SwissprotO494591e-120NAC73_ARATH; NAC domain-containing protein 73
TrEMBLA0A0F6S3950.0A0A0F6S395_POPTO; NAC transcription factor
STRINGPOPTR_0004s04900.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF122834108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.11e-122NAC domain containing protein 73
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]
  3. Jervis J, et al.
    A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood.
    Phytochemistry, 2015. 115: p. 112-20
    [PMID:25771508]