PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0006s1030.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | C2H2 | ||||||||
Protein Properties | Length: 188aa MW: 21284.9 Da PI: 8.6737 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.7 | 4.3e-05 | 31 | 53 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C++ Fs+ L H+++H SapurV1A.0006s1030.1.p 31 YTCSFCKREFSSAQALGGHMNVH 53 9********************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 1.0E-4 | 28 | 56 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 5.98E-7 | 28 | 57 | No hit | No description |
PROSITE profile | PS50157 | 11.406 | 31 | 58 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0036 | 31 | 53 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 1.2E-6 | 31 | 54 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 33 | 53 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 188 aa Download sequence Send to blast |
MDRSYLQRSS RNNVILEGDH STGISWPQRN YTCSFCKREF SSAQALGGHM NVHRRDRARL 60 KQLPSWFFEC PKPTYSRSNP KPSPYSSSKF SPYPDHTHDR SSLSPFLTSF SSPSCPEKKS 120 MVECPQSMYS TRKISDMRSA VVVGAGELKK SSVQEGEQTS ENLSLDLEMR CEDPKQVLDL 180 ELRLGCF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1njq_A | 1e-11 | 26 | 53 | 2 | 29 | superman protein |
2l1o_A | 1e-11 | 26 | 53 | 2 | 29 | Transcriptional regulator SUPERMAN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0006s1030.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006386236.2 | 1e-103 | transcriptional regulator SUPERMAN | ||||
TrEMBL | A0A2K2BD64 | 1e-102 | A0A2K2BD64_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0002s04260.1 | 1e-100 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2843 | 31 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42410.1 | 6e-26 | zinc finger protein 11 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0006s1030.1.p |