PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0003s0740.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family HD-ZIP
Protein Properties Length: 237aa    MW: 27172.1 Da    PI: 4.6997
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0003s0740.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.81e-193084256
                            T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                            +++++f++eq++ Le++Fe++  +  +++ +LAk+lgL+ rqV +WFqN+Ra++k
  SapurV1A.0003s0740.1.p 30 KNKRRFSDEQIKSLESMFESETRLEPRKKMQLAKELGLQPRQVAIWFQNKRARWK 84
                            67889*************************************************9 PP
2HD-ZIP_I/II123.51e-3931122293
             HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 
                             +krr+s+eq+k+LE++Fe+e++Lep++K++la+eLglqprqva+WFqn+RAR+k+kqlE+dy+ L+++y++l+++ e+L+ke+++L 
  SapurV1A.0003s0740.1.p  31 NKRRFSDEQIKSLESMFESETRLEPRKKMQLAKELGLQPRQVAIWFQNKRARWKSKQLERDYSILRASYNSLASRFETLKKEKQALV 117
                             79************************************************************************************* PP

             HD-ZIP_I/II  89 eelke 93 
                              +l++
  SapurV1A.0003s0740.1.p 118 VQLQK 122
                             99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466897.76E-201088IPR009057Homeodomain-like
PROSITE profilePS5007118.5442686IPR001356Homeobox domain
SMARTSM003896.9E-172890IPR001356Homeobox domain
PfamPF000465.0E-173084IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.5E-203193IPR009057Homeodomain-like
CDDcd000864.54E-153587No hitNo description
PRINTSPR000316.1E-65766IPR000047Helix-turn-helix motif
PROSITE patternPS0002706184IPR017970Homeobox, conserved site
PRINTSPR000316.1E-66682IPR000047Helix-turn-helix motif
PfamPF021833.6E-1586127IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MFEEEEYSPS ETEPFSCMNG ATTSRKKKNK NKRRFSDEQI KSLESMFESE TRLEPRKKMQ  60
LAKELGLQPR QVAIWFQNKR ARWKSKQLER DYSILRASYN SLASRFETLK KEKQALVVQL  120
QKINDLMKKP GEEGDCQGPA VNSREGKSVN ADTTKGESET NPRLSIERSE HGLGVLSDED  180
SSIKAEYFEL EEEPNLISMV EPADGSLTSQ EDWGSLDSDG LFDQSSSDYQ WWDFWA*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269|PubMed:15604708, ECO:0000269|PubMed:8771791}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00650PBMTransfer from LOC_Os09g35910Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0003s0740.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:8771791}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU2266150.0CU226615.1 Populus EST from severe drought-stressed leaves.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002302659.11e-151homeobox-leucine zipper protein ATHB-7
SwissprotP468971e-72ATHB7_ARATH; Homeobox-leucine zipper protein ATHB-7
TrEMBLB9GR611e-149B9GR61_POPTR; Uncharacterized protein
STRINGPOPTR_0002s17680.11e-150(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56353452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.14e-68homeobox 7
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhou SF, et al.
    Membrane-associated transcription factor peptidase, site-2 protease, antagonizes ABA signaling in Arabidopsis.
    New Phytol., 2015. 208(1): p. 188-97
    [PMID:25919792]