PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00024909-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | GRAS | ||||||||
Protein Properties | Length: 441aa MW: 48314 Da PI: 4.9231 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 287.3 | 4.2e-88 | 47 | 430 | 2 | 373 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsP 89 ++lLl+c a++s+d +laq++++ l++ as++gdp+qRla+yf++AL +r +r ++++++ p+ + ++ +++ l ++++ P SMil_00024909-RA_Salv 47 EKLLLHCGSALESNDVTLAQQVMWVLNNVASSTGDPNQRLASYFLRALISRASRVCPTTMSFKPAAPHRR---LMSVTELAGYVDLLP 131 689***************************************************9998887555555553...2223333459***** PP GRAS 90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg...skeeleetgerLakfAeelg 173 +++f++ +aN+aIleav g vHi+D++i++++QWp++++aL + p+gpp lRi + + + + ++ee+g+rL +fA+ + SMil_00024909-RA_Salv 132 WHRFGFCAANSAILEAVRGFPSVHILDLSITHCMQWPTFIDALGKVPGGPPaALRISVPSWRPPApplLNASIEEVGQRLVNFAKFRD 219 ***********************************************888879****9887555577999****************** PP GRAS 174 vpfefnvl.............vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh 248 vpfefnv+ + + l++l+ + +v+ +Eal+Vn++ l +l+d++ + s rd++L+ + +l+P++v+vv++++d+ SMil_00024909-RA_Salv 220 VPFEFNVVdlggeeeeeeesaYDSLLSQLNAFAVKVNADEALVVNVQNWLRYLPDDESRIMSIRDSFLESIGRLNPRLVTVVDEDCDL 307 ************99987666444456677777778999************************************************** PP GRAS 249 nsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakq 336 ++ ++ r++ +++y++ fd+le+ lp+es +ri +E +g +i+n+v ega r+er e+ ++ +r+ aGF++vpl+e+++k+ SMil_00024909-RA_Salv 308 -GGGLASRIAACFNYMWIPFDALETFLPKESPQRIEYESD-IGHKIENIVGFEGAPRVERPESGSRLCHRMAGAGFTSVPLGEETVKE 393 .678************************************.*********************************************** PP GRAS 337 aklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373 +k+ll +++ ++g++ +e++ lvl+Wk+++ v + aW SMil_00024909-RA_Salv 394 VKALLDEHAsGWGMKK-DEEDMLVLTWKGHNAVYAAAW 430 *********5555443.4456788************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 44.858 | 20 | 411 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.4E-85 | 47 | 430 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 441 aa Download sequence Send to blast |
MKAEARGMNP PTISPLQNPS GLFTNSRGSI SGALTGCLSS LDGACIEKLL LHCGSALESN 60 DVTLAQQVMW VLNNVASSTG DPNQRLASYF LRALISRASR VCPTTMSFKP AAPHRRLMSV 120 TELAGYVDLL PWHRFGFCAA NSAILEAVRG FPSVHILDLS ITHCMQWPTF IDALGKVPGG 180 PPAALRISVP SWRPPAPPLL NASIEEVGQR LVNFAKFRDV PFEFNVVDLG GEEEEEEESA 240 YDSLLSQLNA FAVKVNADEA LVVNVQNWLR YLPDDESRIM SIRDSFLESI GRLNPRLVTV 300 VDEDCDLGGG LASRIAACFN YMWIPFDALE TFLPKESPQR IEYESDIGHK IENIVGFEGA 360 PRVERPESGS RLCHRMAGAG FTSVPLGEET VKEVKALLDE HASGWGMKKD EEDMLVLTWK 420 GHNAVYAAAW APRANQHPLA D |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_B | 3e-52 | 47 | 432 | 88 | 474 | Protein SHORT-ROOT |
5b3h_B | 8e-53 | 47 | 432 | 34 | 420 | Protein SHORT-ROOT |
5b3h_E | 8e-53 | 47 | 432 | 34 | 420 | Protein SHORT-ROOT |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011077907.1 | 0.0 | scarecrow-like protein 32 | ||||
Swissprot | Q9SN22 | 1e-125 | SCL32_ARATH; Scarecrow-like protein 32 | ||||
TrEMBL | A0A4D8ZTC5 | 0.0 | A0A4D8ZTC5_SALSN; Uncharacterized protein | ||||
STRING | PGSC0003DMT400067360 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA10303 | 22 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49950.1 | 1e-127 | GRAS family protein |