PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00024533-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family TCP
Protein Properties Length: 329aa    MW: 36021.5 Da    PI: 9.6027
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00024533-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP142.33.8e-44752122136
                    TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.........ssssaseceaessss 80 
                            a kkdrhski T +g+RdRRvRls+ +a++fFdLq+ LGfdk+skt++WLl+++k+ai++l +          +s  +sece +s ++
  SMil_00024533-RA_Salv  75 ASKKDRHSKIDTVQGPRDRRVRLSIGVARKFFDLQENLGFDKPSKTLDWLLTKSKTAIQDLEEMkerdaaaaaKSGGSSECEVDSGEN 162
                            78*************************************************************9554433322222224442222222 PP

                    TCP  81 sasnsssgkaaksaakskksqksaasalnlakesrakarararertrekmriknkl 136
                             a+     + + +a++s+k ++ aa++ + akesr karararertrekm+ik kl
  SMil_00024533-RA_Salv 163 GAE-----NPKHAANSSNKLKAAAAAKDSSAKESRVKARARARERTREKMCIK-KL 212
                            222.....333333356666667777789999********************9.44 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.1E-3976208IPR005333Transcription factor, TCP
PROSITE profilePS5136933.19677135IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137012.151189206IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MFSKNNAYNF SLPSASSHPR TSAAALVGLN ANDFLLHHHD MLSAHHHFAA NQELCGLSGD  60
HPLAAAANPC GGAKASKKDR HSKIDTVQGP RDRRVRLSIG VARKFFDLQE NLGFDKPSKT  120
LDWLLTKSKT AIQDLEEMKE RDAAAAAKSG GSSECEVDSG ENGAENPKHA ANSSNKLKAA  180
AAAKDSSAKE SRVKARARAR ERTREKMCIK KLNETRNINA DFAPIHFMNN QLDLRKIAAA  240
SSSNINLGFR EAMQLHCHPT YEAHAAANHE DLIQESIVIK RKVKNPLGFQ QNLIISSSNY  300
GVPAPYNAAA AENWDNICAI LDQHKFINR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM5267974e-73KM526797.1 Perovskia atriplicifolia TCP transcription factor (CYC2B) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012835027.14e-84PREDICTED: transcription factor DICHOTOMA-like
TrEMBLA0A4D9BU401e-127A0A4D9BU40_SALSN; Uncharacterized protein
STRINGMigut.K00858.1.p2e-83(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43332244
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67260.27e-25TCP family protein