PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00022889-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

Trihelix

Protein Properties

Length: 305aa MW: 35501.6 Da PI: 4.1589

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00022889-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	35.2	3.2e-11	72	155	2	87
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 W+++e +L+e+ e+ +l+r++l++ +W +v +k+ + g er+ +C++ ++ l+++ykk+ + +++ s+s++++f++++a SMil_00022889-RA_Salv 72 WSEDESFVLLEVWGERYMELGRRSLRAEDWVDVMEKVaEMSGRERTEAECRSQLDVLKNKYKKEMAKVESG---SVSKWVFFKKMDA 155 ***********************************445688****************99998875...7889*****85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	5.7E-18	70	156	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 305 aa Download sequence Send to blast
MKNPNSYSYR SSTAVDYDDE DNDFDDNEDN PDKSFAQNGN FYNFENSKRH PKKRKLESFV 60 SNYEFAPRSE AWSEDESFVL LEVWGERYME LGRRSLRAED WVDVMEKVAE MSGRERTEAE 120 CRSQLDVLKN KYKKEMAKVE SGSVSKWVFF KKMDALLNLR TRGYGGLGCG LDSGEYVFMN 180 PRVYLDRSNV LDEMRDSPGQ SDEDNEEDGG DDDEEDLSGD NVVDDESARM LADSIQKFGE 240 VYEKIEESKR RQMVELETMR QDFQRDLELQ KKQIVERAQA EIAKIRELDD DEDENTDTSA 300 ENFGD

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011078350.1	1e-151	trihelix transcription factor ASIL2
Refseq	XP_011078351.1	1e-151	trihelix transcription factor ASIL2
TrEMBL	A0A4D9AWV9	1e-166	A0A4D9AWV9_SALSN; Uncharacterized protein
STRING	Migut.K00459.1.p	1e-138	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12060	20	22

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24490.1	5e-72	Trihelix family protein