PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00022214-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

Trihelix

Protein Properties

Length: 270aa MW: 29993 Da PI: 9.9379

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00022214-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	69.1	8.6e-22	38	126	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergf...erspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 +W+ +e+ aLi+a+++++ +lrrg+l++++W+ev++ +++r ++++qC++k+e+l+kry+++ +++++++ +s s++++f+++ SMil_00022214-RA_Salv 38 CWSPEETVALIDAYKDKWYSLRRGNLRGNHWQEVADDVASRCPavpPKTSVQCRHKMEKLRKRYRAEIQRSSSGARRSASSWAHFHNM 125 7***********************************555431257899************************************ PP trihelix 86 e 86 + SMil_00022214-RA_Salv 126 H 126 8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	2.1E-22	37	128	No hit	No description
Gene3D	G3DSA:1.10.10.60	5.6E-4	39	94	IPR009057	Homeodomain-like
PROSITE profile	PS50090	6.423	39	98	IPR017877	Myb-like domain
SMART	SM00595	4.2E-8	46	133	IPR006578	MADF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 270 aa Download sequence Send to blast
MATIISPSSP DDIPTATLAL PTVAAAAAPA PRRLPPPCWS PEETVALIDA YKDKWYSLRR 60 GNLRGNHWQE VADDVASRCP AVPPKTSVQC RHKMEKLRKR YRAEIQRSSS GARRSASSWA 120 HFHNMHSMEK GSDPTPPPSS SSDDEDEDNK TNSVKRINDL YNRHTNGSGS TSTPGVRIKM 180 PGAASTNPNP NPRIIPPNSS SGGKSVVEAI QALGEGFMRM EKMKMEMAQQ IEEMRMEMEL 240 KRTEMILDSQ HRIVDAFARA IKKPKNHHYA

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011093230.1	1e-118	trihelix transcription factor ASIL2
TrEMBL	A0A4D9B442	1e-122	A0A4D9B442_SALSN; Uncharacterized protein
STRING	Migut.N01727.1.p	1e-106	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA8028	23	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44730.1	6e-32	Trihelix family protein