PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00019365-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family HSF
Protein Properties Length: 360aa    MW: 40122.9 Da    PI: 6.1385
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00019365-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.17.9e-35281202103
                            HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXX CS
           HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkg 89 
                            F++k+y++++d+++++li w + +nsf+vl++ +f++++Lp yFkh+nf+SFvRQLn+YgF+kv+ ++         weF++++F +g
  SMil_00019365-RA_Salv  28 FVMKTYQMVNDPATNRLIAWGRANNSFIVLEPLDFSQRILPAYFKHHNFSSFVRQLNTYGFRKVDPDR---------WEFANEWFLRG 106
                            9********************999*****************************************999.........*********** PP

                            XXXXXXXXXXXXXX CS
           HSF_DNA-bind  90 kkellekikrkkse 103
                            +++ll++i r+k++
  SMil_00019365-RA_Salv 107 QTHLLCNIARRKHT 120
                            ***********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.8E-3618112IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.6E-5224117IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.01E-3224117IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.8E-172851IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.2E-2928117IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.8E-176678IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406791IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.8E-177991IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
LVCVGVGAIM RGMEVNDNSS SSNTVAPFVM KTYQMVNDPA TNRLIAWGRA NNSFIVLEPL  60
DFSQRILPAY FKHHNFSSFV RQLNTYGFRK VDPDRWEFAN EWFLRGQTHL LCNIARRKHT  120
SRSGGGHLKQ EDEEDEVLIA EIAKLKQEQK SLEQELQSMN RRLEATERRP QQMMTFLCKV  180
VQDPDILPQI MLEKEKMRRL TPDKKRKLMI TTSSSNSLSG TAHSGSSVKS EDDQDQDQDH  240
DRPNAMAEST PISSPDGNFD HDAYPSSPSL EMSSPEWLSH GRFNVGVSMP IIRPDHRPNY  300
ANLSSPSGID LGRGSDGLAA VSSGAGHEAA DGFGYLERLV AEESGNPPPP YPFSLLGGGF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-2341173129Heat shock factor protein 1
5d5v_B2e-2341173129Heat shock factor protein 1
5d5v_D2e-2341173129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00379DAPTransfer from AT3G24520Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011078395.11e-125heat stress transcription factor C-1-like
SwissprotQ9LV521e-85HSFC1_ARATH; Heat stress transcription factor C-1
TrEMBLA0A4D9A8E90.0A0A4D9A8E9_SALSN; Heat shock transcription factor, other eukaryote
STRINGMigut.E00326.1.p1e-119(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA68322333
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.12e-79heat shock transcription factor C1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Guan Q,Yue X,Zeng H,Zhu J
    The protein phosphatase RCF2 and its interacting partner NAC019 are critical for heat stress-responsive gene regulation and thermotolerance in Arabidopsis.
    Plant Cell, 2014. 26(1): p. 438-53
    [PMID:24415771]