PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00017838-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

C2H2

Protein Properties

Length: 291aa MW: 32560.1 Da PI: 9.9961

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00017838-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.6	1.1e-05	83	105	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H SMil_00017838-RA_Salv 83 FVCEICSKGFQRDQNLQLHRRGH 105 89*******************88 PP
2	zf-C2H2	13.4	0.00022	160	182	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H + + SMil_00017838-RA_Salv 160 WKCEKCSKRYAVQSDWKAHSKIC 182 58*****************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.74E-7	82	105	No hit	No description
Gene3D	G3DSA:3.30.160.60	3.0E-5	82	105	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	10.887	83	105	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.036	83	105	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	85	105	IPR007087	Zinc finger, C2H2
SMART	SM00355	110	125	155	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	5.4E-5	148	181	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.74E-7	155	180	No hit	No description
SMART	SM00355	130	160	180	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 291 aa Download sequence Send to blast
MLQGMGVDDS LSNLTSAISN EASINSSSNV NEMGGGGTIP QQHMYNPSQP PPPKKRRNLP 60 GNPDPDAEVV ALSPHALMAT NRFVCEICSK GFQRDQNLQL HRRGHNLPWK LKQRSSKEVV 120 RKKVYVCPEP SCVHHDPARA LGDLTGIKKH FFRKHGEKKW KCEKCSKRYA VQSDWKAHSK 180 ICGTREYRCD CGTLFSRRDS FITHRAFCDA LAEESSRAMP QTAPINHAQI HAFTNPNFPN 240 LKQETLNFTL PPWLSPNDPF GEAPSRGAPP PAAAPSLMSA TRCCRRPRRW G

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	2e-35	156	217	3	64	Zinc finger protein JACKDAW
5b3h_F	2e-35	156	217	3	64	Zinc finger protein JACKDAW
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	109	122	KLKQRSSKEVVRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011081677.1	1e-139	protein indeterminate-domain 7 isoform X1
Swissprot	Q8H1F5	1e-115	IDD7_ARATH; Protein indeterminate-domain 7
TrEMBL	A0A4D8Z3Z1	1e-175	A0A4D8Z3Z1_SALSN; Uncharacterized protein
STRING	Migut.A00127.1.p	1e-132	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA103	24	350

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55110.1	1e-112	indeterminate(ID)-domain 7

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]