PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00017613-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | B3 | ||||||||
Protein Properties | Length: 905aa MW: 100200 Da PI: 7.3964 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 55.6 | 9.9e-18 | 330 | 430 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkl 84 f+kvl+ sd+++ +rlvlpk +ae++ +++ e+ l+++d +g++W +++++ +++s++yvl+ G ++ +L++gD+v+F++ SMil_00017613-RA_Salv 330 FEKVLSASDAGRISRLVLPKACAEAYfpPISQLEGLPLRIQDVKGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSR 416 99**************************555556777***************9989999999***9.********************9 PP -SSSEE..EEEEE-S CS B3 85 dgrsefelvvkvfrk 99 ++ e++l+++++++ SMil_00017613-RA_Salv 417 ID-PEGKLLMGFRKA 430 87.888888888765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.7E-28 | 322 | 432 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 8.24E-19 | 327 | 429 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.03E-22 | 328 | 429 | No hit | No description |
SMART | SM01019 | 6.4E-21 | 330 | 431 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.124 | 330 | 431 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.8E-15 | 330 | 430 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS51050 | 13.876 | 593 | 643 | IPR011124 | Zinc finger, CW-type |
Pfam | PF07496 | 3.6E-9 | 598 | 640 | IPR011124 | Zinc finger, CW-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 905 aa Download sequence Send to blast |
MGFAVHPARW NGKRVGPCNP VALLLSVIIA GRGLGSTSGV YFNLQRKLVV NMTAYKDLVF 60 CETFHSEETG WRECTSCGKN LTRKLCSVFI VDALLPVRCW SYSTLVGSTV RAAARVVRVL 120 TPMQTPLEEK HKACGLSMEN GTDRNSERML PAQSGDEAKM DCQENLLPSQ NANVTSRKLE 180 DDLASPEGIG YKLFSSSNQS PVGPSKNYDM FQESKSLHKS LVETNLSISL SASSNSNTLS 240 GVMTEERQLN TAISSFQQGC RPRHLLPRVP TILASGLETN SSSISQLRVA RPPVEGRVKS 300 QLLPRYWPRI TDQELQQISG DSNSTIVPLF EKVLSASDAG RISRLVLPKA CAEAYFPPIS 360 QLEGLPLRIQ DVKGKEWVFQ FRFWPNNNSR MYVLEGVTPC IQSMQLQAGD TVTFSRIDPE 420 GKLLMGFRKA SNSVSVQKQD SHYPMDMRAF QGDTLIGNAE SLPLISGYSG LLQSLKGNGS 480 PSMTLFPKHV YPGNISPQII ERNVCKSGGE NLLPQSLVPS ERKRRNIGAK SKRLLIDGHD 540 SLELRLSWEE VQDLLQPPPT AKPSTVSVED HEIEEFDEPP VFGKRSIFIV RHSGEQEQWT 600 QCDSCLKWRK LPIDLLLPLR WTCQDNINDQ MRCSCSAPDE MDSRELENLL RMHKDFTKRR 660 ALSIPKPVHG QESQENVEAL TNGAGNTSEP GSSSVATTTR HPRHRPGCSC IVCIQPPSGK 720 GKHKPTCTCN VCMTVKRRFK TLMMRKKKRQ SEREAEIAQR NQFAKEEAEV DSVAPPQHVQ 780 LDNNAKRSES ENLLKCQSDG GPSQENAENF NGGLDLNCCP APSSHISMMN LLQEASLPLE 840 TYLRQNGLTS LVVSEQQESS TPVIAQASGE TTTQARDDAG CSTAAQEHEG SNDLSEKEQR 900 EDDTS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9a_A | 1e-68 | 308 | 437 | 2 | 131 | B3 domain-containing transcription repressor VAL1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 735 | 746 | KRRFKTLMMRKK |
2 | 735 | 748 | KRRFKTLMMRKKKR |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011095138.1 | 0.0 | B3 domain-containing transcription repressor VAL2 isoform X1 | ||||
Refseq | XP_020553390.1 | 0.0 | B3 domain-containing transcription repressor VAL2 isoform X1 | ||||
Refseq | XP_020553391.1 | 0.0 | B3 domain-containing transcription repressor VAL2 isoform X1 | ||||
TrEMBL | A0A4D8Z0Q2 | 0.0 | A0A4D8Z0Q2_SALSN; Uncharacterized protein | ||||
STRING | Migut.J00040.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1491 | 23 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32010.1 | 0.0 | HSI2-like 1 |