PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00017613-RA_Salv
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family B3
Protein Properties Length: 905aa    MW: 100200 Da    PI: 7.3964
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00017613-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.69.9e-18330430199
                            EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                            f+kvl+ sd+++ +rlvlpk +ae++   +++ e+  l+++d +g++W +++++  +++s++yvl+ G     ++ +L++gD+v+F++
  SMil_00017613-RA_Salv 330 FEKVLSASDAGRISRLVLPKACAEAYfpPISQLEGLPLRIQDVKGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSR 416
                            99**************************555556777***************9989999999***9.********************9 PP

                            -SSSEE..EEEEE-S CS
                     B3  85 dgrsefelvvkvfrk 99 
                            ++  e++l+++++++
  SMil_00017613-RA_Salv 417 ID-PEGKLLMGFRKA 430
                            87.888888888765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.7E-28322432IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.24E-19327429IPR015300DNA-binding pseudobarrel domain
CDDcd100173.03E-22328429No hitNo description
SMARTSM010196.4E-21330431IPR003340B3 DNA binding domain
PROSITE profilePS5086311.124330431IPR003340B3 DNA binding domain
PfamPF023623.8E-15330430IPR003340B3 DNA binding domain
PROSITE profilePS5105013.876593643IPR011124Zinc finger, CW-type
PfamPF074963.6E-9598640IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 905 aa     Download sequence    Send to blast
MGFAVHPARW NGKRVGPCNP VALLLSVIIA GRGLGSTSGV YFNLQRKLVV NMTAYKDLVF  60
CETFHSEETG WRECTSCGKN LTRKLCSVFI VDALLPVRCW SYSTLVGSTV RAAARVVRVL  120
TPMQTPLEEK HKACGLSMEN GTDRNSERML PAQSGDEAKM DCQENLLPSQ NANVTSRKLE  180
DDLASPEGIG YKLFSSSNQS PVGPSKNYDM FQESKSLHKS LVETNLSISL SASSNSNTLS  240
GVMTEERQLN TAISSFQQGC RPRHLLPRVP TILASGLETN SSSISQLRVA RPPVEGRVKS  300
QLLPRYWPRI TDQELQQISG DSNSTIVPLF EKVLSASDAG RISRLVLPKA CAEAYFPPIS  360
QLEGLPLRIQ DVKGKEWVFQ FRFWPNNNSR MYVLEGVTPC IQSMQLQAGD TVTFSRIDPE  420
GKLLMGFRKA SNSVSVQKQD SHYPMDMRAF QGDTLIGNAE SLPLISGYSG LLQSLKGNGS  480
PSMTLFPKHV YPGNISPQII ERNVCKSGGE NLLPQSLVPS ERKRRNIGAK SKRLLIDGHD  540
SLELRLSWEE VQDLLQPPPT AKPSTVSVED HEIEEFDEPP VFGKRSIFIV RHSGEQEQWT  600
QCDSCLKWRK LPIDLLLPLR WTCQDNINDQ MRCSCSAPDE MDSRELENLL RMHKDFTKRR  660
ALSIPKPVHG QESQENVEAL TNGAGNTSEP GSSSVATTTR HPRHRPGCSC IVCIQPPSGK  720
GKHKPTCTCN VCMTVKRRFK TLMMRKKKRQ SEREAEIAQR NQFAKEEAEV DSVAPPQHVQ  780
LDNNAKRSES ENLLKCQSDG GPSQENAENF NGGLDLNCCP APSSHISMMN LLQEASLPLE  840
TYLRQNGLTS LVVSEQQESS TPVIAQASGE TTTQARDDAG CSTAAQEHEG SNDLSEKEQR  900
EDDTS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A1e-683084372131B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1735746KRRFKTLMMRKK
2735748KRRFKTLMMRKKKR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011095138.10.0B3 domain-containing transcription repressor VAL2 isoform X1
RefseqXP_020553390.10.0B3 domain-containing transcription repressor VAL2 isoform X1
RefseqXP_020553391.10.0B3 domain-containing transcription repressor VAL2 isoform X1
TrEMBLA0A4D8Z0Q20.0A0A4D8Z0Q2_SALSN; Uncharacterized protein
STRINGMigut.J00040.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14912365
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.10.0HSI2-like 1