PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00017546-RA_Salv
Common NameMYB80
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family MYB
Protein Properties Length: 533aa    MW: 57846 Da    PI: 4.9616
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00017546-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding551.9e-174693148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           +g+WT  Ed +lv++vk++G g+W+++ ++ g+ R++k+c++rw ++l
  SMil_00017546-RA_Salv 46 KGPWTSAEDAILVEYVKKHGEGNWNAVQKHTGLARCGKSCRLRWANHL 93
                           79******************************************9986 PP
2Myb_DNA-binding51.23e-1699142146
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                            +g++T eE+ l++++++++G++ W++ a++++ gRt++++k++w++
  SMil_00017546-RA_Salv  99 KGAFTSEEERLIIELHAKMGNK-WARMAAHLP-GRTDNEIKNYWNT 142
                            799*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.0514193IPR017930Myb domain
SMARTSM007172.5E-144595IPR001005SANT/Myb domain
SuperFamilySSF466891.42E-3045140IPR009057Homeodomain-like
PfamPF002497.0E-164693IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-2447100IPR009057Homeodomain-like
CDDcd001675.43E-124893No hitNo description
PROSITE profilePS5129426.02394148IPR017930Myb domain
SMARTSM007171.4E-1698146IPR001005SANT/Myb domain
PfamPF002494.0E-1599142IPR001005SANT/Myb domain
CDDcd001674.06E-12101142No hitNo description
Gene3DG3DSA:1.10.10.601.5E-25101147IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009789Biological Processpositive regulation of abscisic acid-activated signaling pathway
GO:0043068Biological Processpositive regulation of programmed cell death
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0045926Biological Processnegative regulation of growth
GO:0048235Biological Processpollen sperm cell differentiation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 533 aa     Download sequence    Send to blast
LLDVIEQMGR SSTAESEDGV LSADSPLSND GDNFGGSSNG GVVLKKGPWT SAEDAILVEY  60
VKKHGEGNWN AVQKHTGLAR CGKSCRLRWA NHLRPNLKKG AFTSEEERLI IELHAKMGNK  120
WARMAAHLPG RTDNEIKNYW NTRIKRRQRA GLPLYPSDLC LQSLPENQQL SSPRIYGGDK  180
ACNDILQNNG YRAPDIMFDS YNILTFAPEV PGIPGSVSMG NSFASPHSYG FVPQTIGVPD  240
RAREPDEPMS DYGSGGVNEA PTFNRTRTDS CVNKSFQSFG LCFPYDPDHT KKLLSSGVNQ  300
DTPFMSDVTF SASEHFADAQ KSELPSLQYQ ETGLGVWDPP PESFDSLVQS PLSGPLPSHC  360
PSPGSSGLLE DLIYEAKALG KLENQSSAWA TSSNVSHGEV TDGSAFRTCS TEFKGYIDPN  420
SPSGNSMGSL FNRYTPTTGR SLEDDVTMHH VKSEVFDPSW IVDGESKVDY SRPDAILGSC  480
WVEQSGPASK QKGSTTDSIA ALLGDTSASA STWGFTSCSW NNMPPVCQIS DIP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-33441475107B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00490DAPTransfer from AT5G06100Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF0594340.0KF059434.1 Salvia miltiorrhiza MYB-related transcription factor (MYB80) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011091869.10.0transcription factor GAMYB
RefseqXP_011091870.10.0transcription factor GAMYB
RefseqXP_011091873.10.0transcription factor GAMYB
RefseqXP_020552724.10.0transcription factor GAMYB
TrEMBLA0A059PRV50.0A0A059PRV5_SALMI; MYB-related transcription factor
STRINGMigut.O00612.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14059713
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06100.31e-106myb domain protein 33
Publications ? help Back to Top
  1. Li C,Lu S
    Genome-wide characterization and comparative analysis of R2R3-MYB transcription factors shows the complexity of MYB-associated regulatory networks in Salvia miltiorrhiza.
    BMC Genomics, 2014. 15: p. 277
    [PMID:24725266]