PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00016697-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | C2H2 | ||||||||
Protein Properties | Length: 460aa MW: 49112.4 Da PI: 8.831 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.8 | 1.9e-05 | 53 | 75 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H SMil_00016697-RA_Salv 53 FVCEICSKGFQRDQNLQLHRRGH 75 89*******************88 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.23E-6 | 52 | 75 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 5.4E-5 | 52 | 75 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 10.887 | 53 | 75 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.036 | 53 | 75 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 55 | 75 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 250 | 94 | 124 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 4.7E-4 | 117 | 150 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.23E-6 | 124 | 150 | No hit | No description |
SMART | SM00355 | 87 | 129 | 149 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 460 aa Download sequence Send to blast |
MVEMEISSPT QDGTKSDQTT PPAKRKRNLP GMPDPDSEVI ALSPKTLLAT NRFVCEICSK 60 GFQRDQNLQL HRRGHNLPWK LRQRTSKEVR KRVYVCPETT CVHHEPSRAL GDLTGIKKHF 120 CRKHGEKKYK CDRCSKKYAV HSDCKAHMKT CGSREYRCDC GTLFSRRDSF ITHRAFCDAL 180 AQEISRPQPL VVDDSSGRDL KDGDAEPLPP PSAASSPPQP PLTPSTQVLS PVLSIQSSAG 240 LTENQSIQLQ AAAAAASSSS TSSSRGGVVP ISLNASAPPS YTTFSSPAIS LSLSSLFKSA 300 SQNPPRSHYA QPPALSATAL LQKAAQMGAT SSKSSFLQGL WLSGPTTPSD SQHLESLSLT 360 SPTPNADCSV KLESNSLASG LGLGLPSGGG ASGFTQLMIS PPTTLDFLGL GMPAGEASSD 420 GFSAFFSRLH HMPPPAAPFS PVRAAGDTWD EAQDRKPSML |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 3e-29 | 125 | 190 | 3 | 68 | Zinc finger protein JACKDAW |
5b3h_F | 3e-29 | 125 | 190 | 3 | 68 | Zinc finger protein JACKDAW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269|PubMed:21571950, ECO:0000269|PubMed:25035403}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011074522.1 | 1e-160 | protein indeterminate-domain 2 | ||||
Swissprot | Q9LVQ7 | 1e-123 | IDD1_ARATH; Zinc finger protein ENHYDROUS | ||||
TrEMBL | A0A4D9C1B5 | 0.0 | A0A4D9C1B5_SALSN; Uncharacterized protein | ||||
STRING | XP_009805007.1 | 1e-149 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA103 | 24 | 350 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50700.1 | 1e-108 | indeterminate(ID)-domain 2 |
Publications ? help Back to Top | |||
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